Create pubmed offline database - Githubissues

cmdelaserna / clinical-trials

Exploration of Clinical Trials data

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Create pubmed offline database #74

Open cmdelaserna opened 4 years ago

cmdelaserna commented 4 years ago

[ ] Import all data into postgres.
[ ] Test whether elasticsearch can be implemented on top of postgres for searches.

Try Pubmed Portable project https://github.com/KerstenDoering/PubMedPortable

Other links:

Test docker installation for Ubuntu https://levelup.gitconnected.com/using-docker-and-pyspark-134cd4cab867
Pyspark to Postgres: https://medium.com/@usmanazhar4/how-to-read-and-write-from-database-in-spark-using-pyspark-150d39cdbb72
Java app: https://github.com/OHDSI/MedlineXmlToDatabase