cmelab / polybinder

Initialization of thermoplastic polymer systems to simulate thermal welding
GNU General Public License v3.0
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Feat/remove hydrogen #22

Closed chrisjonesBSU closed 3 years ago

chrisjonesBSU commented 3 years ago

Added a line of code that removes the hydrogen atoms from the parmed structure. So, this occurs after the all atom system is typed. The mass of the system (and therefore density) is calculated with hydrogens before they are removed.