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cmkobel / CompareM2

🦠📇 Microbial genomes-to-report pipeline
https://CompareM2.readthedocs.io
GNU General Public License v3.0
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--configure input_files="genome.fna" #58

Closed cmkobel closed 8 months ago

cmkobel commented 11 months ago

Parse this. How to handle plural genomes? Like --configure input_files="genome1.fna genome2.fna" ?

When this option is set, using resident files in the cwd should be ignored.

cmkobel commented 8 months ago

I need to find a way of globbing the files like bash, but inside the python script. I'm trying to run /usr/bin/ls, but I keep getting empty stdout captures.