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cmkobel / CompareM2

🦠📇 Microbial genomes-to-report pipeline
https://CompareM2.readthedocs.io
GNU General Public License v3.0
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Implement downloading ko00001.json #90

Closed cmkobel closed 6 months ago

cmkobel commented 7 months ago

Downloaded from https://www.kegg.jp/kegg-bin/download_htext?htext=ko00001.keg&format=json&filedir= Used in kegg_pathway.R.

cmkobel commented 6 months ago

I'm actually considering whether it would be better to use GO BP instead of KEGG, as KEGG is outdated. See https://genomic.social/deck/@mdziemann/111933336579691473

cmkobel commented 6 months ago

Merging this with #78