search

cmks / DAS_Tool

DAS Tool
Other
140 stars 17 forks source link

doMC not found even if it's installed #75

Closed SilasK closed 2 years ago

SilasK commented 2 years ago

We get the folowing error https://github.com/metagenome-atlas/atlas/issues/496

Cleaning up...  [0s]
Total time = 4.138s
Reported 68 pairwise alignments, 68 HSPs.
68 queries aligned.
starting annotations of single copy cogs...
successfully finished
calculating contig lengths.
Error in library(x, character.only = TRUE) : 
  there is no package called ‘doMC’
Calls: lapply ... suppressPackageStartupMessages -> withCallingHandlers -> library
Execution halted
mv: cannot stat ‘sample2/binning/DASTool/sample2_DASTool_scaffolds2bin.txt’: No such file or directory

There is a problem with doMC even though it's installed with conda. Is a specific version required?

cmks commented 2 years ago

I've only tested doMC versions >= 1.3.4. However, the error message says that the package is not found - independently of the installed version. Have you checked if the R library path is set correctly?

cmks commented 2 years ago

Closing this ticket as the latest version (1.1.4) does not require doMC any more.