Ability to save intermediate (post trimming and host removal) fastq in bz2

cmmr / EsViritu

Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data

MIT License

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Ability to save intermediate (post trimming and host removal) fastq in bz2 #10

Open anilsurathu opened 8 months ago

anilsurathu commented 8 months ago

This can be achieved by keeping the temp files and compressing the fastq. But it would be nice to have a new parameter to save the intermediate fastq in bz2 format without needing to save all temp files which could take up a lot of space.