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cmmr / virmap

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Sereal: Error: Bad Sereal header: Not a valid Sereal document. at offset 1 of input at srl_decoder.c line 600 at /usr/local/bin/determineTaxonomy.pl line 1749. #17

Open biotech21kr opened 3 years ago

biotech21kr commented 3 years ago

Hi, I installed VirMAP on the Centos 7 linux machine. In test run with viral mock community, I encountered the following error in the "filtered.err" file. The perl version I am using is 5.32 and the sereal version is 4.018 What is the workaround? Thank you.

Closing the output file... [0s] Closing the database file... [0s] Deallocating taxonomy... [0s] Total time = 640.564s Temporary disk space used: 0.00387378 GB Reported 173449 pairwise alignments, 174092 HSPs. 921 queries aligned. Use of uninitialized value in subroutine entry at /usr/local/bin/determineTaxonomy.pl line 1749. Sereal: Error: Bad Sereal header: Not a valid Sereal document. at offset 1 of input at srl_decoder.c line 600 at /usr/local/bin/determineTaxonomy.pl line 1749. Perl exited with active threads: 10 running and unjoined 0 finished and unjoined 0 running and detached

torptube commented 3 years ago

Is this on AWS?

I haven't tested the install on CentOS, just Amazon Linux 2 and Ubuntu to a lesser degree.

biotech21kr commented 3 years ago

Thank you for your reply, I'll try again on AWS.