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cmmr / virmap

GNU Affero General Public License v3.0
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Virmap DNA and Protein fasta header #5

Open songli-bgi opened 5 years ago

songli-bgi commented 5 years ago

Hi Matt,

I want to use this pipeline in my project, and I met some errors. I generate the header of fasta like this:

gi|453534|gb|AB458345.1|the name of viral;taxID=45453

I use the same header for DNA and protein fasta files. But when I run clusterReference.pl or superScaffold.pl , I met some errors. And I check the code, found lineparts[2], it will use the field "gb", so, please help me to fix this problem. kindly provide some examples about the header of DNA and protein fasta files.

Best, Song Li

najami commented 5 years ago

Hi Song, Thank you for you interest in using VirMAP! Please email me at nadimajami@gmail.com so I can better assist you with the pipeline issues you are having. Best, Nadim