user@malive:~/openmx$ openmx Methane.dat
The number of threads in each node for OpenMP parallelization is 1.
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Welcome to OpenMX Ver. 3.9.9
Copyright (C), 2002-2019, T. Ozaki
OpenMX comes with ABSOLUTELY NO WARRANTY.
This is free software, and you are welcome to
redistribute it under the constitution of the GNU-GPL.
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<Input_std> Your input file was normally read.
<Input_std> The system includes 2 species and 5 atoms.
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PAO and VPS
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<SetPara_DFT> PAOs of species H were normally found.
<SetPara_DFT> PAOs of species C were normally found.
<SetPara_DFT> VPSs of species H were normally found.
H_PBE19.vps is j-dependent.
In case of scf.SpinOrbit.Coupling=off,
j-dependent pseudo potentials are averaged by j-degeneracy,
which corresponds to a scalar relativistic treatment.
<SetPara_DFT> VPSs of species C were normally found.
C_PBE19.vps is j-dependent.
In case of scf.SpinOrbit.Coupling=off,
j-dependent pseudo potentials are averaged by j-degeneracy,
which corresponds to a scalar relativistic treatment.
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Fourier transform of PAO and projectors of VNL
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<FT_PAO> Fourier transform of pseudo atomic orbitals
Could not open a file /met_rst/met.ftpao in FT_PAO
<FT_NLP> Fourier transform of non-local projectors
Could not open a file /met_rst/met.ftnlp in FT_NLP
<FT_ProExpn_VNA> Fourier transform of VNA separable projectors
Could not open a file /met_rst/met.ftPEvna in FT_ProExpn_VNA
<FT_VNA> Fourier transform of VNA potentials
Error2: Could not open a file /met_rst/met.ftCvna in FT_VNA
<FT_ProductPAO> Fourier transform of product of PAOs
Could not open a file /met_rst/met.ftProPAO in FT_ProductPAO
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Allocation of atoms to processors at MD_iter= 1
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proc = 0 # of atoms= 5 estimated weight= 5.00000
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Analysis of neighbors and setting of grids
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TFNAN= 20 Average FNAN= 4.00000
TSNAN= 0 Average SNAN= 0.00000
<truncation> CpyCell= 1 ct_AN= 1 FNAN SNAN 4 0
<truncation> CpyCell= 1 ct_AN= 2 FNAN SNAN 4 0
<truncation> CpyCell= 1 ct_AN= 3 FNAN SNAN 4 0
<truncation> CpyCell= 1 ct_AN= 4 FNAN SNAN 4 0
<truncation> CpyCell= 1 ct_AN= 5 FNAN SNAN 4 0
TFNAN= 20 Average FNAN= 4.00000
TSNAN= 0 Average SNAN= 0.00000
<truncation> CpyCell= 2 ct_AN= 1 FNAN SNAN 4 0
<truncation> CpyCell= 2 ct_AN= 2 FNAN SNAN 4 0
<truncation> CpyCell= 2 ct_AN= 3 FNAN SNAN 4 0
<truncation> CpyCell= 2 ct_AN= 4 FNAN SNAN 4 0
<truncation> CpyCell= 2 ct_AN= 5 FNAN SNAN 4 0
TFNAN= 20 Average FNAN= 4.00000
TSNAN= 0 Average SNAN= 0.00000
<truncation> CpyCell= 2 ct_AN= 1 FNAN SNAN 4 0
<truncation> CpyCell= 2 ct_AN= 2 FNAN SNAN 4 0
<truncation> CpyCell= 2 ct_AN= 3 FNAN SNAN 4 0
<truncation> CpyCell= 2 ct_AN= 4 FNAN SNAN 4 0
<truncation> CpyCell= 2 ct_AN= 5 FNAN SNAN 4 0
<Check_System> The system is molecule.
lattice vectors (bohr)
A = 18.897259885789, 0.000000000000, 0.000000000000
B = 0.000000000000, 18.897259885789, 0.000000000000
C = 0.000000000000, 0.000000000000, 18.897259885789
reciprocal lattice vectors (bohr^-1)
RA = 0.332491871581, 0.000000000000, 0.000000000000
RB = 0.000000000000, 0.332491871581, 0.000000000000
RC = 0.000000000000, 0.000000000000, 0.332491871581
Grid_Origin -9.300995100037 -9.300995100037 -9.300995100037
Cell_Volume = 6748.333037104149 (Bohr^3)
GridVol = 0.025742847584 (Bohr^3)
Grid_Origin -9.300995100037 -9.300995100037 -9.300995100037
Cell_Volume = 6748.333037104149 (Bohr^3)
GridVol = 0.025742847584 (Bohr^3)
<UCell_Box> Info. of cutoff energy and num. of grids
lattice vectors (bohr)
A = 18.897259885789, 0.000000000000, 0.000000000000
B = 0.000000000000, 18.897259885789, 0.000000000000
C = 0.000000000000, 0.000000000000, 18.897259885789
reciprocal lattice vectors (bohr^-1)
RA = 0.332491871581, 0.000000000000, 0.000000000000
RB = 0.000000000000, 0.332491871581, 0.000000000000
RC = 0.000000000000, 0.000000000000, 0.332491871581
Required cutoff energy (Ryd) for 3D-grids = 120.0000
Used cutoff energy (Ryd) for 3D-grids = 113.2041, 113.2041, 113.2041
Num. of grids of a-, b-, and c-axes = 64, 64, 64
Segmentation fault