cmungall / cell-ontology-DO-NOT-USE

Initial attempt to move repo from gcode. USE OBOPHENOTYPE
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Create importer that brings plant and animal cells into same ontology #106

Open GoogleCodeExporter opened 9 years ago

GoogleCodeExporter commented 9 years ago
GO needs to unify its Termgenie template for cell-based terms.

We need an "uber-cell" ontology that includes both plant and animal cells under 
a general cell class

Original issue reported on code.google.com by cmung...@gmail.com on 16 Dec 2013 at 10:13

GoogleCodeExporter commented 9 years ago
This issue was closed by revision r316.

Original comment by cmung...@gmail.com on 16 Dec 2013 at 10:13

GoogleCodeExporter commented 9 years ago
Some limitations of existing solution:

 - all of PO is imported. In future consider importing subset under "plant cell"
 - PO has no "plant native cell" class, so there is no bridge at this level

Original comment by cmung...@gmail.com on 16 Dec 2013 at 10:15

GoogleCodeExporter commented 9 years ago
Also: bridging axiom is currently a subclass axiom - should be 
taxon-equivalence axiom, as in uberon

Original comment by cmung...@gmail.com on 16 Dec 2013 at 10:20

GoogleCodeExporter commented 9 years ago
TODO:

 - import cell type subset of FAO
 - import cell type subset of DDANAT
 - decide on strategy for all other cell types (e.g. spore)

Original comment by cmung...@gmail.com on 16 Dec 2013 at 10:25