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cmungall / cell-ontology-DO-NOT-USE

Initial attempt to move repo from gcode. USE OBOPHENOTYPE
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small intestine crypt goblet cell EquivalentTo 'smooth muscle cell' and (part_of some kidney) #111

Closed GoogleCodeExporter closed 9 years ago

GoogleCodeExporter commented 9 years ago 
obviously wrong. Detected via spatial disjointness axioms in uberon

Original issue reported on code.google.com by cmung...@gmail.com on 10 Feb 2014 at 5:09

GoogleCodeExporter commented 9 years ago 
CL_1000318 seems to be two conflated classes:

label: kidney smooth muscle cell
label: small intestine crypt goblet cell

The former label is (arbitrarily) showing up first, but the def is

A goblet cell that is part of the epithelium of crypt of lieberkuhn of small 
intestine.

Both equivalence axioms present.

Safest thing is to obsolete. Can recreated each in TG
Recreated xref for FMA:263050 ! Goblet cell of epithelium of crypt of 
Lieberkuhn of small intestine

Original comment by cmung...@gmail.com on 10 Feb 2014 at 5:17

GoogleCodeExporter commented 9 years ago 
The pipeline should have caught this even without the logical axiom, as oort 
checks for dupe labels... need to check this

Original comment by cmung...@gmail.com on 10 Feb 2014 at 5:18

GoogleCodeExporter commented 9 years ago 
This issue was closed by revision r328.

Original comment by cmung...@gmail.com on 10 Feb 2014 at 5:19