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cmungall / cell-ontology-DO-NOT-USE

Initial attempt to move repo from gcode. USE OBOPHENOTYPE
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Disjointness violation for luteal cell #9

Closed GoogleCodeExporter closed 9 years ago

GoogleCodeExporter commented 9 years ago 

http://build.berkeleybop.org/job/build-uberon/220/console

cause:

germ line cell appears to be defined very liberally. This causes luteal cell to 
be classified as germ line when it is in fact somatic

details:

[Term]
id: CL:0000039
name: germ line cell
namespace: cell
def: "A cell that is within the developmental lineage of gametes and is able to 
pass along its genetic material to offspring." [GOC:tfm, ISBN:0721662544]
comment: Originally this term had some plant germ line cell children.
intersection_of: CL:0000548 ! animal cell
intersection_of: capable_of GO:0022414 ! reproductive process
disjoint_from: CL:0002371 ! somatic cell

and the part_of here:

[Term]
id: CL:0000175
name: luteal cell
namespace: cell
def: "A progesterone secreting cell in the corpus luteum. The large luteal 
cells develop from the granulosa cells. The small luteal cells develop from the 
theca cells." [MESH:A.05.360.319.114.630.278.400]
synonym: "lutein cell" EXACT []
xref: BTO:0003939
xref: FMA:18688
is_a: CL:0000174 ! steroid hormone secreting cell
is_a: CL:0002132 ! stromal cell of ovary
relationship: capable_of GO:0042701 ! progesterone secretion
relationship: part_of UBERON:0002512 ! corpus luteum

Original issue reported on code.google.com by cmung...@gmail.com on 22 Aug 2012 at 1:05

GoogleCodeExporter commented 9 years ago 
This issue was closed by revision r54.

Original comment by cmung...@gmail.com on 22 Aug 2012 at 1:06