cmungall / cell-ontology-DO-NOT-USE

Initial attempt to move repo from gcode. USE OBOPHENOTYPE
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CD45RO not associated with any lymphocytes? #90

Closed GoogleCodeExporter closed 9 years ago

GoogleCodeExporter commented 9 years ago
What steps will reproduce the problem?
1. search for CD45RO as a keyword
2. observe that there are four entries involving this protein, all for variant 
forms of the protein
3. none of the forms are associated with a cell, e.g., Memory T Reg cells

What is the expected output? What do you see instead?
CD45RO+ or CD45RO- should be associated with memory or naive Treg cells, 
respectively, according to the HIPC lyoplate specification

What version of the product are you using? On what operating system?
http://www.ontobee.org/browser/index.php?keywords=CD45RO&Submit2=Search+terms&o=
CL

Please provide any additional information below.

Original issue reported on code.google.com by ypouliot...@gmail.com on 20 Aug 2013 at 10:33

GoogleCodeExporter commented 9 years ago
See new cell types CL:0001045, naive CCR4-positive regulatory T cell, and 
CL:0001046, memory CCR4-positive regulatory T cell, added as part of r281, 
October 11, 2013.

CL:0001045:
'naive regulatory T cell'
 and (has_plasma_membrane_part some 'C-C chemokine receptor type 4')
 and (lacks_plasma_membrane_part some 'receptor-type tyrosine-protein phosphatase C isoform CD45RO')

CL:0001046:
'memory regulatory T cell'
 and (has_plasma_membrane_part some 'receptor-type tyrosine-protein phosphatase C isoform CD45RO')
 and (has_plasma_membrane_part some 'C-C chemokine receptor type 4')

Original comment by addi...@buffalo.edu on 4 Nov 2013 at 8:50

GoogleCodeExporter commented 9 years ago

Original comment by addi...@buffalo.edu on 4 Nov 2013 at 8:51

GoogleCodeExporter commented 9 years ago

Original comment by addi...@buffalo.edu on 4 Nov 2013 at 8:52