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cmungall / sf-test

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issue with: dilated heart left ventricle #175

Open cmungall opened 9 years ago

cmungall commented 9 years ago

Originally reported on Google Code with ID 8

'dilated heart left ventricle' should be a subclass of 'Abnormality of the left ventricle',
but this is not inferred.

Reported by cmungall on 2014-03-17 19:12:28

cmungall commented 9 years ago 
AoLV:
has_part some 
    (quality
     and ('inheres in' some 'heart left ventricle')
     and (qualifier some abnormal))

DHLV:
has_part some 
    (dilated
     and ('inheres in' some 'heart left ventricle'))

Reported by cmungall on 2014-03-17 19:26:50

cmungall commented 9 years ago 
This is weird.

I have mammal.owl open, I am doing a DL query:

has_part some
    (dilated
      and ('inheres in' some 'heart left ventricle'))

with all boxes checked

And I get nada...  I should get equivalent to DHLV...?

I suspect there is some issue with two distinct object properties with the same label...
hate Protege for this

Reported by cmungall on 2014-03-17 19:32:35

cmungall commented 9 years ago 
Seb's problem is fixed by: http://compbio.charite.de/svn/hpo/trunk/misc/obo-typedefs/obo-typedefs.txt

We no longer have any .obo in our pipeline, not clear why we have an issue here...

Reported by cmungall on 2014-03-17 20:16:37