Open justin2004 opened 3 years ago
and i bet if you prepend prefixes it'll shorten the URIs
Nice! I have been using a hacky perl script
On Sun, May 2, 2021, 07:09 justin2004 @.***> wrote:
note: indentation and URI shortening are on the cards for future releases.
just wanted to share that there is a command line utility in apache jena https://jena.apache.org/ that can do the sparql query formatting.
e.g.
@.:/tmp$ cat a.sparql SELECT ?g ?h WHERE {?g http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://purl.obolibrary.org/obo/SO_0001217 . ?g http://biohackathon.org/resource/faldo#location ?l . ?l http://biohackathon.org/resource/faldo#begin ?v0 . ?v0 http://biohackathon.org/resource/faldo#position ?b . ?v0 http://biohackathon.org/resource/faldo#reference http://rdf.ebi.ac.uk/resource/ensembl/90/mus_musculus/GRCm38/11 . ?l http://biohackathon.org/resource/faldo#end ?v1 . ?v1 http://biohackathon.org/resource/faldo#position ?e . ?v1 http://biohackathon.org/resource/faldo#reference http://rdf.ebi.ac.uk/resource/ensembl/90/mus_musculus/GRCm38/11 . FILTER (?b >= 101100523) . FILTER (?e <= 101190725) . ?g http://semanticscience.org/resource/SIO_000558 ?h . ?h http://purl.obolibrary.org/obo/RO_0002162 http://identifiers.org/taxonomy/9606} @.:/tmp$ @.***:/tmp$ qparse --query a.sparql SELECT ?g ?h WHERE { ?g a http://purl.obolibrary.org/obo/SO_0001217 ; http://biohackathon.org/resource/faldo#location ?l . ?l http://biohackathon.org/resource/faldo#begin ?v0 . ?v0 http://biohackathon.org/resource/faldo#position ?b ; http://biohackathon.org/resource/faldo#reference http://rdf.ebi.ac.uk/resource/ensembl/90/mus_musculus/GRCm38/11 . ?l http://biohackathon.org/resource/faldo#end ?v1 . ?v1 http://biohackathon.org/resource/faldo#position ?e ; http://biohackathon.org/resource/faldo#reference http://rdf.ebi.ac.uk/resource/ensembl/90/mus_musculus/GRCm38/11 FILTER ( ?b >= 101100523 ) FILTER ( ?e <= 101190725 ) ?g http://semanticscience.org/resource/SIO_000558 ?h . ?h http://purl.obolibrary.org/obo/RO_0002162 http://identifiers.org/taxonomy/9606 }
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just wanted to share that there is a command line utility in apache jena that can do the sparql query formatting.
e.g.