FVA is slow on windows and sometimes linux

cnapy-org / CNApy

An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!

https://cnapy-org.github.io/CNApy-guide/

Apache License 2.0

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FVA is slow on windows and sometimes linux #169

Closed sthiele closed 3 years ago

sthiele commented 3 years ago

Maybe this is caused by bad multithreading? Set number of processes to 1? https://cobrapy.readthedocs.io/en/latest/autoapi/cobra/index.html?highlight=processes#cobra.Configuration.processes

axelvonkamp commented 3 years ago

Current workaround for Windows: Set number of processes in cobra.Configuration() to 1, e.g. via the "Configure COBRApy" dialog. I haven't had problems with Linux so far, does someone have a reproducible setup that is slow on Linux?

sthiele commented 3 years ago

Maybe @Paulocracy ?