search

cnapy-org / CNApy

An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!
https://cnapy-org.github.io/CNApy-guide/
Apache License 2.0
46 stars 7 forks source link

minimal cut sets error #462

Closed parsanayyara closed 1 year ago

parsanayyara commented 1 year ago

Hi, I was trying to compute minimal cut sets in CNApy and it keeps returning this error. Can anyone explain why this happens and how I can fix it? I am new to CNApy so any help would be much appreciated!

image
axelvonkamp commented 1 year ago

Can you mail me the .cna project and describe which constraints you have used for the cut sets problem? As a workaround, you can also use strain design to calculate cut sets, it is a different implementation and hopefully it should work there.

axelvonkamp commented 1 year ago

Please update to the latest CNApy version, this should fix the problem.