Add EFM normalization button (#503)

cnapy-org / CNApy

An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!

https://cnapy-org.github.io/CNApy-guide/

Apache License 2.0

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Add EFM normalization button (#503) #504

Closed Paulocracy closed 9 months ago

axelvonkamp commented 10 months ago

Usually one would like the normalization to be applied to all modes at once and not only to the one on display.

Paulocracy commented 9 months ago

@axelvonkamp You're right, look at my new solution attempt which applies the normalization to all EFMs.

axelvonkamp commented 9 months ago

This works, but if you save the modes after normalization and load them later they will be unchanged which might be confusing, but this is perhaps not a big deal. Also, the mode_normalization_reaction should be reset when the mode navigator is being closed.