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cnapy-org / CNApy

An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!
https://cnapy-org.github.io/CNApy-guide/
Apache License 2.0
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unified strain design #519

Closed axelvonkamp closed 2 months ago

axelvonkamp commented 4 months ago

optlang_enumerator is now an additional option in the strain design dialog

Paulocracy commented 4 months ago

I get the following error when using e.g. "R1 >= 1.0" as suppressed module in the SmallExample model with optlang_enumerator:

Traceback (most recent call last): File "/scratch/GitHub/CNApy/cnapy/gui_elements/strain_design_dialog.py", line 1457, in compute_optlang mcs,
err_val = mcs_computation.compute_mcs(model, TypeError: compute_mcs() got an unexpected keyword argument 'knock_in_idx'
axelvonkamp commented 4 months ago

I get the following error when using e.g. "R1 >= 1.0" as suppressed module in the SmallExample model with optlang_enumerator:

Traceback (most recent call last): File "/scratch/GitHub/CNApy/cnapy/gui_elements/strain_design_dialog.py", line 1457, in compute_optlang mcs,
err_val = mcs_computation.compute_mcs(model, TypeError: compute_mcs() got an unexpected keyword argument 'knock_in_idx'

You need to upgrade optlang_enumerator to 0.0.10