kllrdr
commented
1 year ago I could solve this issue by using remotes instead of devtools: library(remotes) remotes::install_github("jrs95/hyprcoloc") library(hyprcoloc)
Open smozaffari opened 2 years ago
kllrdr
commented
1 year ago I could solve this issue by using remotes instead of devtools: library(remotes) remotes::install_github("jrs95/hyprcoloc") library(hyprcoloc)
laleoarrow
commented
2 months ago Im also having this issue.
ERROR: package installation failed Error: Failed to install 'hyprcoloc' from GitHub: ! System command 'R' failed '''
arunhpatil
commented
1 month ago Hi @cnfoley,
I have the same issue.
The error is as follows:
Downloading GitHub repo jrs95/hyprcoloc@HEAD
── R CMD build ──────────────────────────────────────────────────────────────────────────────────────────
✔ checking for file ‘/private/var/folders/sp/mbfx40bn6bx889h6t4pqknvm0000gn/T/RtmpKQ9xx6/remotes16f424bbce0c5/jrs95-hyprcoloc-0348bbd/DESCRIPTION’ ...
─ preparing ‘hyprcoloc’:
✔ checking DESCRIPTION meta-information ...
─ cleaning src
─ installing the package to build vignettes
-----------------------------------
─ installing *source* package ‘hyprcoloc’ ...
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.3.9.4)’
using SDK: ‘MacOSX14.4.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -Wall -pedantic -fdiagnostics-color=always -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/RcppEigen.h:25:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/Sparse:26:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/SparseCore:61:
/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
Index count = 0;
^
In file included from RcppExports.cpp:4:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/RcppEigen.h:25:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/Sparse:29:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/SparseLU:35:
/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
^
/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
Index nsuper_et = 0; // Number of relaxed snodes in the original etree
^
In file included from RcppExports.cpp:4:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/RcppEigen.h:25:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
Index replacements = 0;
^
In file included from RcppExports.cpp:4:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/RcppEigen.h:25:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/RcppEigenForward.h:37:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
int count = 0;
^
5 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -Wall -pedantic -fdiagnostics-color=always -c align1.cpp -o align1.o
In file included from align1.cpp:3:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/RcppEigen.h:25:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/Sparse:26:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/SparseCore:61:
/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
Index count = 0;
^
In file included from align1.cpp:3:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/RcppEigen.h:25:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/Sparse:29:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/SparseLU:35:
/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
^
/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
Index nsuper_et = 0; // Number of relaxed snodes in the original etree
^
In file included from align1.cpp:3:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/RcppEigen.h:25:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
Index replacements = 0;
^
In file included from align1.cpp:3:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/RcppEigen.h:25:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/RcppEigenForward.h:37:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
int count = 0;
^
5 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -Wall -pedantic -fdiagnostics-color=always -c align12.cpp -o align12.o
In file included from align12.cpp:3:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/RcppEigen.h:25:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/Sparse:26:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/SparseCore:61:
/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
Index count = 0;
^
In file included from align12.cpp:3:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/RcppEigen.h:25:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/Sparse:29:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/SparseLU:35:
/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
^
/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
Index nsuper_et = 0; // Number of relaxed snodes in the original etree
^
In file included from align12.cpp:3:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/RcppEigen.h:25:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
Index replacements = 0;
^
In file included from align12.cpp:3:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/RcppEigen.h:25:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/RcppEigenForward.h:37:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
int count = 0;
^
5 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -Wall -pedantic -fdiagnostics-color=always -c align1ind.cpp -o align1ind.o
In file included from align1ind.cpp:3:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/RcppEigen.h:25:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/Sparse:26:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/SparseCore:61:
/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
Index count = 0;
^
In file included from align1ind.cpp:3:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/RcppEigen.h:25:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/Sparse:29:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/SparseLU:35:
/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
^
/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
Index nsuper_et = 0; // Number of relaxed snodes in the original etree
^
In file included from align1ind.cpp:3:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/RcppEigen.h:25:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
Index replacements = 0;
^
In file included from align1ind.cpp:3:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/RcppEigen.h:25:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/RcppEigenForward.h:37:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
int count = 0;
^
5 warnings generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -Wall -pedantic -fdiagnostics-color=always -c align2.cpp -o align2.o
In file included from align2.cpp:3:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/RcppEigen.h:25:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/Sparse:26:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/SparseCore:61:
/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
Index count = 0;
^
In file included from align2.cpp:3:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/RcppEigen.h:25:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/Sparse:29:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/SparseLU:35:
/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
^
/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
Index nsuper_et = 0; // Number of relaxed snodes in the original etree
^
In file included from align2.cpp:3:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/RcppEigen.h:25:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
Index replacements = 0;
^
In file included from align2.cpp:3:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/RcppEigen.h:25:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/RcppEigenForward.h:37:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
int count = 0;
^
align2.cpp:180:17: error: assigning to 'Scalar' (aka 'double') from incompatible type 'typename internal::enable_if<internal::valid_indexed_view_overload<double, double>::value && internal::traits<typename ConstIndexedViewType<double, double>::type>::ReturnAsIndexedView, typename ConstIndexedViewType<double, double>::type>::type' (aka 'Eigen::IndexedView<const Eigen::Map<Eigen::Matrix<double, -1, -1>>, double, double>')
tmp_rho(i) = RHO(snps1(1 , i)-1, snps1(0 , i)-1);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
align2.cpp:213:46: error: assigning to 'Scalar' (aka 'double') from incompatible type 'const CwiseBinaryOp<internal::scalar_product_op<typename internal::traits<IndexedView<const Map<Matrix<double, -1, -1, 0, -1, -1>, 0, Stride<0, 0>>, double, SingleRange>>::Scalar, typename internal::promote_scalar_arg<Scalar, double, (Eigen::internal::has_ReturnType<Eigen::ScalarBinaryOpTraits<Scalar, double, Eigen::internal::scalar_product_op<Scalar, double>>>::value)>::type>, const IndexedView<const Map<Matrix<double, -1, -1, 0, -1, -1>, 0, Stride<0, 0>>, double, SingleRange>, const typename internal::plain_constant_type<IndexedView<const Map<Matrix<double, -1, -1, 0, -1, -1>, 0, Stride<0, 0>>, double, SingleRange>, typename internal::promote_scalar_arg<Scalar, double, (Eigen::internal::has_ReturnType<Eigen::ScalarBinaryOpTraits<Scalar, double, Eigen::internal::scalar_product_op<Scalar, double>>>::value)>::type>::type>' (aka 'const CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::IndexedView<const Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, double, Eigen::internal::SingleRange>, const CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1, 0, -1, 1>>>')
snp_cor_1cv(2*m) = RHO(snps1(0,i)-1, j2)*tet_1cv(2*m);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
align2.cpp:214:48: error: assigning to 'Scalar' (aka 'double') from incompatible type 'const CwiseBinaryOp<internal::scalar_product_op<typename internal::traits<IndexedView<const Map<Matrix<double, -1, -1, 0, -1, -1>, 0, Stride<0, 0>>, double, SingleRange>>::Scalar, typename internal::promote_scalar_arg<Scalar, double, (Eigen::internal::has_ReturnType<Eigen::ScalarBinaryOpTraits<Scalar, double, Eigen::internal::scalar_product_op<Scalar, double>>>::value)>::type>, const IndexedView<const Map<Matrix<double, -1, -1, 0, -1, -1>, 0, Stride<0, 0>>, double, SingleRange>, const typename internal::plain_constant_type<IndexedView<const Map<Matrix<double, -1, -1, 0, -1, -1>, 0, Stride<0, 0>>, double, SingleRange>, typename internal::promote_scalar_arg<Scalar, double, (Eigen::internal::has_ReturnType<Eigen::ScalarBinaryOpTraits<Scalar, double, Eigen::internal::scalar_product_op<Scalar, double>>>::value)>::type>::type>' (aka 'const CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::IndexedView<const Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, double, Eigen::internal::SingleRange>, const CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1, 0, -1, 1>>>')
snp_cor_1cv(2*m+1) = RHO(snps1(1,i)-1, j2)*tet_1cv(2*m+1);
~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
align2.cpp:265:57: error: assigning to 'Scalar' (aka 'double') from incompatible type 'const CwiseBinaryOp<internal::scalar_product_op<typename internal::traits<IndexedView<const Map<Matrix<double, -1, -1, 0, -1, -1>, 0, Stride<0, 0>>, double, double>>::Scalar, typename internal::promote_scalar_arg<Scalar, double, (Eigen::internal::has_ReturnType<Eigen::ScalarBinaryOpTraits<Scalar, double, Eigen::internal::scalar_product_op<Scalar, double>>>::value)>::type>, const IndexedView<const Map<Matrix<double, -1, -1, 0, -1, -1>, 0, Stride<0, 0>>, double, double>, const typename internal::plain_constant_type<IndexedView<const Map<Matrix<double, -1, -1, 0, -1, -1>, 0, Stride<0, 0>>, double, double>, typename internal::promote_scalar_arg<Scalar, double, (Eigen::internal::has_ReturnType<Eigen::ScalarBinaryOpTraits<Scalar, double, Eigen::internal::scalar_product_op<Scalar, double>>>::value)>::type>::type>' (aka 'const CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::IndexedView<const Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, double, double>, const CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 0, -1, -1>>>')
snp_cor_2cv(2*m) = RHO(snps1(0,i)-1, snps1(0,j2)-1)*tet_2cv(2*m);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
align2.cpp:266:59: error: assigning to 'Scalar' (aka 'double') from incompatible type 'const CwiseBinaryOp<internal::scalar_product_op<typename internal::traits<IndexedView<const Map<Matrix<double, -1, -1, 0, -1, -1>, 0, Stride<0, 0>>, double, double>>::Scalar, typename internal::promote_scalar_arg<Scalar, double, (Eigen::internal::has_ReturnType<Eigen::ScalarBinaryOpTraits<Scalar, double, Eigen::internal::scalar_product_op<Scalar, double>>>::value)>::type>, const IndexedView<const Map<Matrix<double, -1, -1, 0, -1, -1>, 0, Stride<0, 0>>, double, double>, const typename internal::plain_constant_type<IndexedView<const Map<Matrix<double, -1, -1, 0, -1, -1>, 0, Stride<0, 0>>, double, double>, typename internal::promote_scalar_arg<Scalar, double, (Eigen::internal::has_ReturnType<Eigen::ScalarBinaryOpTraits<Scalar, double, Eigen::internal::scalar_product_op<Scalar, double>>>::value)>::type>::type>' (aka 'const CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::IndexedView<const Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, double, double>, const CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 0, -1, -1>>>')
snp_cor_2cv(2*m+1) = RHO(snps1(1,i)-1, snps1(0,j2)-1)*tet_2cv(2*m+1);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
align2.cpp:267:59: error: assigning to 'Scalar' (aka 'double') from incompatible type 'const CwiseBinaryOp<internal::scalar_product_op<typename internal::traits<IndexedView<const Map<Matrix<double, -1, -1, 0, -1, -1>, 0, Stride<0, 0>>, double, double>>::Scalar, typename internal::promote_scalar_arg<Scalar, double, (Eigen::internal::has_ReturnType<Eigen::ScalarBinaryOpTraits<Scalar, double, Eigen::internal::scalar_product_op<Scalar, double>>>::value)>::type>, const IndexedView<const Map<Matrix<double, -1, -1, 0, -1, -1>, 0, Stride<0, 0>>, double, double>, const typename internal::plain_constant_type<IndexedView<const Map<Matrix<double, -1, -1, 0, -1, -1>, 0, Stride<0, 0>>, double, double>, typename internal::promote_scalar_arg<Scalar, double, (Eigen::internal::has_ReturnType<Eigen::ScalarBinaryOpTraits<Scalar, double, Eigen::internal::scalar_product_op<Scalar, double>>>::value)>::type>::type>' (aka 'const CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::IndexedView<const Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, double, double>, const CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 0, -1, -1>>>')
snp_cor_2cv_1(2*m) = RHO(snps1(0,i)-1, snps1(1,j2)-1)*tet_2cv(2*m);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
align2.cpp:268:61: error: assigning to 'Scalar' (aka 'double') from incompatible type 'const CwiseBinaryOp<internal::scalar_product_op<typename internal::traits<IndexedView<const Map<Matrix<double, -1, -1, 0, -1, -1>, 0, Stride<0, 0>>, double, double>>::Scalar, typename internal::promote_scalar_arg<Scalar, double, (Eigen::internal::has_ReturnType<Eigen::ScalarBinaryOpTraits<Scalar, double, Eigen::internal::scalar_product_op<Scalar, double>>>::value)>::type>, const IndexedView<const Map<Matrix<double, -1, -1, 0, -1, -1>, 0, Stride<0, 0>>, double, double>, const typename internal::plain_constant_type<IndexedView<const Map<Matrix<double, -1, -1, 0, -1, -1>, 0, Stride<0, 0>>, double, double>, typename internal::promote_scalar_arg<Scalar, double, (Eigen::internal::has_ReturnType<Eigen::ScalarBinaryOpTraits<Scalar, double, Eigen::internal::scalar_product_op<Scalar, double>>>::value)>::type>::type>' (aka 'const CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::IndexedView<const Eigen::Map<Eigen::Matrix<double, -1, -1, 0, -1, -1>, 0, Eigen::Stride<0, 0>>, double, double>, const CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 0, -1, -1>>>')
snp_cor_2cv_1(2*m+1) = RHO(snps1(1,i)-1, snps1(1,j2)-1)*tet_2cv(2*m+1);
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
align2.cpp:277:37: error: assigning to 'Scalar' (aka 'double') from incompatible type 'typename internal::enable_if<internal::valid_indexed_view_overload<double, double>::value && internal::traits<typename ConstIndexedViewType<double, double>::type>::ReturnAsIndexedView, typename ConstIndexedViewType<double, double>::type>::type' (aka 'Eigen::IndexedView<const Eigen::Map<Eigen::Matrix<double, -1, -1>>, double, double>')
sigZ2(2*ncolZco+1, 2*ncolZco) = RHO(snps1(1 , j2)-1, snps1(0 , j2)-1);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
align2.cpp:278:37: error: assigning to 'Scalar' (aka 'double') from incompatible type 'typename internal::enable_if<internal::valid_indexed_view_overload<double, double>::value && internal::traits<typename ConstIndexedViewType<double, double>::type>::ReturnAsIndexedView, typename ConstIndexedViewType<double, double>::type>::type' (aka 'Eigen::IndexedView<const Eigen::Map<Eigen::Matrix<double, -1, -1>>, double, double>')
sigZ2(2*ncolZco, 2*ncolZco+1) = RHO(snps1(1 , j2)-1, snps1(0 , j2)-1);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from align2.cpp:3:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/RcppEigen.h:25:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/RcppEigenForward.h:28:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/Dense:1:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/Core:162:
/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/src/Core/util/Meta.h:479:50: error: member reference base type 'const double' is not a structure or union
EIGEN_CONSTEXPR Index size(const T& x) { return x.size(); }
~^~~~~
/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/src/Core/IndexedView.h:125:41: note: in instantiation of function template specialization 'Eigen::internal::size<double>' requested here
Index rows() const { return internal::size(m_rowIndices); }
^
/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/src/Core/../plugins/CommonCwiseBinaryOps.h:50:1: note: in instantiation of member function 'Eigen::IndexedView<const Eigen::Map<Eigen::Matrix<double, -1, -1>>, double, Eigen::internal::SingleRange>::rows' requested here
EIGEN_MAKE_SCALAR_BINARY_OP(operator*,product)
^
/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:1382:3: note: expanded from macro 'EIGEN_MAKE_SCALAR_BINARY_OP'
EIGEN_MAKE_SCALAR_BINARY_OP_ONTHERIGHT(METHOD,OPNAME)
^
/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:1368:86: note: expanded from macro 'EIGEN_MAKE_SCALAR_BINARY_OP_ONTHERIGHT'
typename internal::plain_constant_type<Derived,PromotedT>::type(derived().rows(), derived().cols(), internal::scalar_constant_op<PromotedT>(scalar))); \
^
align2.cpp:213:46: note: in instantiation of function template specialization 'Eigen::MatrixBase<Eigen::IndexedView<const Eigen::Map<Eigen::Matrix<double, -1, -1>>, double, Eigen::internal::SingleRange>>::operator*<double>' requested here
snp_cor_1cv(2*m) = RHO(snps1(0,i)-1, j2)*tet_1cv(2*m);
^
In file included from align2.cpp:3:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/RcppEigen.h:25:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/RcppEigenForward.h:28:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/Dense:1:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/Core:311:
/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/src/Core/IndexedView.h:125:31: error: no matching function for call to 'size'
Index rows() const { return internal::size(m_rowIndices); }
^~~~~~~~~~~~~~
/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/src/Core/../plugins/CommonCwiseBinaryOps.h:50:1: note: in instantiation of member function 'Eigen::IndexedView<const Eigen::Map<Eigen::Matrix<double, -1, -1>>, double, double>::rows' requested here
EIGEN_MAKE_SCALAR_BINARY_OP(operator*,product)
^
/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:1382:3: note: expanded from macro 'EIGEN_MAKE_SCALAR_BINARY_OP'
EIGEN_MAKE_SCALAR_BINARY_OP_ONTHERIGHT(METHOD,OPNAME)
^
/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:1368:86: note: expanded from macro 'EIGEN_MAKE_SCALAR_BINARY_OP_ONTHERIGHT'
typename internal::plain_constant_type<Derived,PromotedT>::type(derived().rows(), derived().cols(), internal::scalar_constant_op<PromotedT>(scalar))); \
^
align2.cpp:265:57: note: in instantiation of function template specialization 'Eigen::MatrixBase<Eigen::IndexedView<const Eigen::Map<Eigen::Matrix<double, -1, -1>>, double, double>>::operator*<double>' requested here
snp_cor_2cv(2*m) = RHO(snps1(0,i)-1, snps1(0,j2)-1)*tet_2cv(2*m);
^
/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/src/Core/util/Meta.h:479:23: note: candidate template ignored: substitution failure [with T = double]
EIGEN_CONSTEXPR Index size(const T& x) { return x.size(); }
^
/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/src/Core/util/Meta.h:482:23: note: candidate template ignored: could not match 'const T[N]' against 'const double'
EIGEN_CONSTEXPR Index size(const T (&) [N]) { return N; }
^
In file included from align2.cpp:3:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/RcppEigen.h:25:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/RcppEigenForward.h:28:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/Dense:1:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/Core:311:
/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/src/Core/IndexedView.h:128:31: error: no matching function for call to 'size'
Index cols() const { return internal::size(m_colIndices); }
^~~~~~~~~~~~~~
/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/src/Core/../plugins/CommonCwiseBinaryOps.h:50:1: note: in instantiation of member function 'Eigen::IndexedView<const Eigen::Map<Eigen::Matrix<double, -1, -1>>, double, double>::cols' requested here
EIGEN_MAKE_SCALAR_BINARY_OP(operator*,product)
^
/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:1382:3: note: expanded from macro 'EIGEN_MAKE_SCALAR_BINARY_OP'
EIGEN_MAKE_SCALAR_BINARY_OP_ONTHERIGHT(METHOD,OPNAME)
^
/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/src/Core/util/Macros.h:1368:104: note: expanded from macro 'EIGEN_MAKE_SCALAR_BINARY_OP_ONTHERIGHT'
typename internal::plain_constant_type<Derived,PromotedT>::type(derived().rows(), derived().cols(), internal::scalar_constant_op<PromotedT>(scalar))); \
^
align2.cpp:265:57: note: in instantiation of function template specialization 'Eigen::MatrixBase<Eigen::IndexedView<const Eigen::Map<Eigen::Matrix<double, -1, -1>>, double, double>>::operator*<double>' requested here
snp_cor_2cv(2*m) = RHO(snps1(0,i)-1, snps1(0,j2)-1)*tet_2cv(2*m);
^
/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/src/Core/util/Meta.h:479:23: note: candidate template ignored: substitution failure [with T = double]
EIGEN_CONSTEXPR Index size(const T& x) { return x.size(); }
^
/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppEigen/include/Eigen/src/Core/util/Meta.h:482:23: note: candidate template ignored: could not match 'const T[N]' against 'const double'
EIGEN_CONSTEXPR Index size(const T (&) [N]) { return N; }
^
5 warnings and 12 errors generated.
make: *** [align2.o] Error 1
ERROR: compilation failed for package ‘hyprcoloc’
─ removing ‘/private/var/folders/sp/mbfx40bn6bx889h6t4pqknvm0000gn/T/Rtmppa4pxC/Rinst17c4c4d7e673b/hyprcoloc’
-----------------------------------
ERROR: package installation failed
Error: Failed to install 'hyprcoloc' from GitHub:
! System command 'R' failedsession Info:
session_info()
─ Session info ────────────────────────────────────────────────────────────────────────────────────────
setting value
version R version 4.4.0 (2024-04-24)
os macOS Sonoma 14.5
system aarch64, darwin20
ui RStudio
language (EN)
collate en_US.UTF-8
ctype en_US.UTF-8
tz America/New_York
date 2024-07-22
rstudio 2024.04.2+764 Chocolate Cosmos (desktop)
pandoc NA
─ Packages ────────────────────────────────────────────────────────────────────────────────────────────
package * version date (UTC) lib source
cachem 1.1.0 2024-05-16 [1] CRAN (R 4.4.0)
callr 3.7.6 2024-03-25 [1] CRAN (R 4.4.0)
cli 3.6.3 2024-06-21 [1] CRAN (R 4.4.0)
curl 5.2.1 2024-03-01 [1] CRAN (R 4.4.0)
desc 1.4.3 2023-12-10 [1] CRAN (R 4.4.0)
devtools * 2.4.5 2022-10-11 [1] CRAN (R 4.4.0)
digest 0.6.36 2024-06-23 [1] CRAN (R 4.4.0)
ellipsis 0.3.2 2021-04-29 [1] CRAN (R 4.4.0)
fastmap 1.2.0 2024-05-15 [1] CRAN (R 4.4.0)
fs 1.6.4 2024-04-25 [1] CRAN (R 4.4.0)
glue 1.7.0 2024-01-09 [1] CRAN (R 4.4.0)
htmltools 0.5.8.1 2024-04-04 [1] CRAN (R 4.4.0)
htmlwidgets 1.6.4 2023-12-06 [1] CRAN (R 4.4.0)
httpuv 1.6.15 2024-03-26 [1] CRAN (R 4.4.0)
later 1.3.2 2023-12-06 [1] CRAN (R 4.4.0)
lifecycle 1.0.4 2023-11-07 [1] CRAN (R 4.4.0)
magrittr 2.0.3 2022-03-30 [1] CRAN (R 4.4.0)
memoise 2.0.1 2021-11-26 [1] CRAN (R 4.4.0)
mime 0.12 2021-09-28 [1] CRAN (R 4.4.0)
miniUI 0.1.1.1 2018-05-18 [1] CRAN (R 4.4.0)
pkgbuild 1.4.4 2024-03-17 [1] CRAN (R 4.4.0)
pkgload 1.4.0 2024-06-28 [1] CRAN (R 4.4.0)
processx 3.8.4 2024-03-16 [1] CRAN (R 4.4.0)
profvis 0.3.8 2023-05-02 [1] CRAN (R 4.4.0)
promises 1.3.0 2024-04-05 [1] CRAN (R 4.4.0)
ps 1.7.7 2024-07-02 [1] CRAN (R 4.4.0)
purrr 1.0.2 2023-08-10 [1] CRAN (R 4.4.0)
R6 2.5.1 2021-08-19 [1] CRAN (R 4.4.0)
Rcpp 1.0.13 2024-07-17 [1] CRAN (R 4.4.0)
remotes * 2.5.0 2024-03-17 [1] CRAN (R 4.4.0)
rlang 1.1.4 2024-06-04 [1] CRAN (R 4.4.0)
rstudioapi 0.16.0 2024-03-24 [1] CRAN (R 4.4.0)
sessioninfo 1.2.2 2021-12-06 [1] CRAN (R 4.4.0)
shiny 1.8.1.1 2024-04-02 [1] CRAN (R 4.4.0)
stringi 1.8.4 2024-05-06 [1] CRAN (R 4.4.0)
stringr 1.5.1 2023-11-14 [1] CRAN (R 4.4.0)
urlchecker 1.0.1 2021-11-30 [1] CRAN (R 4.4.0)
usethis * 2.2.3 2024-02-19 [1] CRAN (R 4.4.0)
vctrs 0.6.5 2023-12-01 [1] CRAN (R 4.4.0)
xtable 1.8-4 2019-04-21 [1] CRAN (R 4.4.0)
[1] /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library
cyang-2014
commented
1 week ago I found the authors documented at https://github.com/jrs95/hyprcoloc#installation for the latest installation procedures/R scripts.
arunhpatil
commented
1 week ago @cyang-2014 ,
Thank you. I figured out from this closed issue. I was hoping the authors had an alternative method of installing instead of downgrading another package.
Also, thanks for sharing the link to jrs95. I didn't know there were two different maintainers with same GitHub repository name.
Thank you, Arun.
Hi, I'm having issues with installation and have tried both options provided as well as installing from source. I would appreciate any ideas on what I'm missing. Thanks!
`install_github("cnfoley/hyprcoloc", build_opts = c("--resave-data", "--no-manual"), build_vignettes = TRUE) Downloading GitHub repo cnfoley/hyprcoloc@HEAD checking for file ‘/private/var/folders/2k/0rmyhh4s40746mvb7gn6s5wm0000gp/T/Rtmp3oichY/remotesb1fc121c95d5/cnfoley-hyprcoloc-✔ checking for file ‘/private/var/folders/2k/0rmyhh4s40746mvb7gn6s5wm0000gp/T/Rtmp3oichY/remotesb1fc121c95d5/cnfoley-hyprcoloc-26ea595/DESCRIPTION’ ─ preparing ‘hyprcoloc’: ✔ checking DESCRIPTION meta-information ... ─ cleaning src ─ installing the package to build vignettes
─ installing source package ‘hyprcoloc’ ... using staged installation libs clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RcppEigen/include' -I/usr/local/include -fPIC -Wall -g -O2 -Wall -pedantic -fdiagnostics-color=always -c RcppExports.cpp -o RcppExports.o In file included from RcppExports.cpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/RcppEigen/include/RcppEigen.h:25: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/RcppEigen/include/RcppEigenForward.h:26: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include/RcppCommon.h:30: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include/Rcpp/r/headers.h:62: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include/Rcpp/platform/compiler.h:100: /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/cmath:317:9: error: no member named 'signbit' in the global namespace using ::signbit; ~~^ /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/cmath:318:9: error: no member named 'fpclassify' in the global namespace using ::fpclassify; ~~^ /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/cmath:319:9: error: no member named 'isfinite' in the global namespace; did you mean 'finite'? using ::isfinite; ~~^ /usr/local/include/math.h:752:12: note: 'finite' declared here extern int finite(double) ^ In file included from RcppExports.cpp:4: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/RcppEigen/include/RcppEigen.h:25: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/RcppEigen/include/RcppEigenForward.h:26: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include/RcppCommon.h:30: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include/Rcpp/r/headers.h:62: In file included from /Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include/Rcpp/platform/compiler.h:100: /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/cmath:320:9: error: no member named 'isinf' in the global namespace using ::isinf; ~~^ /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/cmath:321:9: error: no member named 'isnan' in the global namespace using ::isnan; ~~^ /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/cmath:322:9: error: no member named 'isnormal' in the global namespace using ::isnormal; ~~^ /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/cmath:323:9: error: no member named 'isgreater' in the global namespace using ::isgreater; ~~^ /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/cmath:324:9: error: no member named 'isgreaterequal' in the global namespace using ::isgreaterequal; ~~^ /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/cmath:325:9: error: no member named 'isless' in the global namespace using ::isless; ~~^ /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/cmath:326:9: error: no member named 'islessequal' in the global namespace using ::islessequal; ~~^ /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/cmath:327:9: error: no member named 'islessgreater' in the global namespace using ::islessgreater; ~~^ /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/cmath:328:9: error: no member named 'isunordered' in the global namespace using ::isunordered; ~~^ /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/cmath:329:9: error: no member named 'isunordered' in the global namespace using ::isunordered; ~~^ /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/cmath:640:26: error: no template named 'numeric_limits' bool _FloatBigger = (numeric_limits<_FloatT>::digits > numeric_limits<_IntT>::digits), ^ /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/cmath:640:60: error: no template named 'numeric_limits' bool _FloatBigger = (numeric_limits<_FloatT>::digits > numeric_limits<_IntT>::digits), ^ /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/cmath:641:18: error: no template named 'numeric_limits' int _Bits = (numeric_limits<_IntT>::digits - numeric_limits<_FloatT>::digits)> ^ /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/cmath:641:50: error: no template named 'numeric_limits' int _Bits = (numeric_limits<_IntT>::digits - numeric_limits<_FloatT>::digits)> ^ /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/cmath:646:17: error: no template named 'numeric_limits' static_assert(numeric_limits<_FloatT>::radix == 2, "FloatT has incorrect radix"); ^ /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/cmath:649:25: error: no template named 'numeric_limits' return _FloatBigger ? numeric_limits<_IntT>::max() : (numeric_limits<_IntT>::max() >> _Bits << _Bits); ^ fatal error: too many errors emitted, stopping now [-ferror-limit=] 20 errors generated. make: *** [RcppExports.o] Error 1 ERROR: compilation failed for package ‘hyprcoloc’ ─ removing ‘/private/var/folders/2k/0rmyhh4s40746mvb7gn6s5wm0000gp/T/RtmpqjqdvP/Rinstb55a404e844e/hyprcoloc’
ERROR: package installation failed Error: Failed to install 'hyprcoloc' from GitHub: System command 'R' failed, exit status: 1, stdout & stderr were printed`
`> sessionInfo() R version 4.1.2 (2021-11-01) Platform: x86_64-apple-darwin17.0 (64-bit) Running under: macOS Catalina 10.15.7
Matrix products: default BLAS: /Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libRblas.0.dylib LAPACK: /Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libRlapack.dylib
locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages: [1] stats graphics grDevices utils datasets methods base
other attached packages: [1] devtools_2.4.3 usethis_2.1.5
loaded via a namespace (and not attached): [1] magrittr_2.0.2 pkgload_1.2.4 R6_2.5.1 rlang_1.0.2 [5] fastmap_1.1.0 tools_4.1.2 pkgbuild_1.3.1 sessioninfo_1.2.2 [9] cli_3.2.0 withr_2.4.3 ellipsis_0.3.2 remotes_2.4.2 [13] rprojroot_2.0.2 lifecycle_1.0.1 crayon_1.5.0 brio_1.1.3 [17] processx_3.5.2 purrr_0.3.4 callr_3.7.0 fs_1.5.2 [21] ps_1.6.0 curl_4.3.2 testthat_3.1.2 memoise_2.0.1 [25] glue_1.6.2 cachem_1.0.6 compiler_4.1.2 desc_1.4.0 [29] prettyunits_1.1.1`