In the vignette it states "Our command line tool can automatically compute trait correlation (using a tetrachoric correlation technique) and LD information. However, the R-package requires users to have this information to hand." but I cannot find any details of this command line tool. Could you please point me to where it is?
If I am unable to use this tool to compute trait correlations then what would you recommend? Would genetic correlation be an ok proxy for phenotypic correlation in this setting?
Hi Chris,
In the vignette it states "Our command line tool can automatically compute trait correlation (using a tetrachoric correlation technique) and LD information. However, the R-package requires users to have this information to hand." but I cannot find any details of this command line tool. Could you please point me to where it is?
If I am unable to use this tool to compute trait correlations then what would you recommend? Would genetic correlation be an ok proxy for phenotypic correlation in this setting?
Thanks in advance and I hope you are well! Anna