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cnio-bu / beyondcell

Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq and Spatial Transcriptomics data.
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Error in result[sigs, cells, drop = FALSE] : subscript out of bounds in bcRegressOut #106

Closed SGMartin closed 1 year ago

SGMartin commented 1 year ago

Potential issue related to included pathways when a defaut collection is used.

SGMartin commented 1 year ago

UPDATE:

The issue stems from the fact that the function FindDrugs has not been updated to reflect the changes in the drug database schema. Any subsequent function calling FindDrugsis affected. At this moment, this includes:

SGMartin commented 1 year ago

UPDATE n2

I was wrong. Indeed, FindDrugs and bcRanks were indeed affected by the aforementioned issue (see #108) but this is a separate issue, see #111

SGMartin commented 1 year ago

Closed in #111