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cnio-bu / beyondcell

Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq and Spatial Transcriptomics data.
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Error in GenerateGenesets(PSc) #154

Closed AcetylCoALab closed 3 months ago

AcetylCoALab commented 5 months ago

gs <- GenerateGenesets(PSc) Error in GenerateGenesets(PSc) : no slot of name "up_genes" for this object of class "geneset"

SGMartin commented 5 months ago

Hi @AcetylCoALab

PSc is a default collection in beyondcell and thus, you should use GetCollection If you want to load it. GenerateGenesets is for .gmt files.