Closed Silve-Ruano closed 3 months ago
@mj-jimenez
Hey @Silve-Ruano sorry for the late reply
Are you trying to analyze spatial transcriptomics data or a regular sc dataset?
I am trying to reproduce your paper, with the single cell data of authors Ho, Kinker, Jerby-Arnon and Stewart. I already solved the problem and the bug was in the versions of the Seurat and SeuratObject packages. Thank you very much for your reply!
@Silve-Ruano Yeah, we should have pinned both Seurat and SeuratObject versions but oh well. Glad it helped!
I have an error when using the bcScore function, and it is that the Large Seurat Object "sc" does not have the slot images, while in the ST_analysis, the LargeSeuratObject "st" does after performing the same data processing. Thank you very much.![image](https://github.com/cnio-bu/beyondcell/assets/157005665/0d0fcf23-e299-469c-800c-969a1102ccca)