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cnio-bu / beyondcell

Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq and Spatial Transcriptomics data.
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Error in images slot of bcScore function #156

Closed Silve-Ruano closed 3 months ago

Silve-Ruano commented 4 months ago

I have an error when using the bcScore function, and it is that the Large Seurat Object "sc" does not have the slot images, while in the ST_analysis, the LargeSeuratObject "st" does after performing the same data processing. Thank you very much. image

SGMartin commented 4 months ago

@mj-jimenez

SGMartin commented 3 months ago

Hey @Silve-Ruano sorry for the late reply

Are you trying to analyze spatial transcriptomics data or a regular sc dataset?

Silve-Ruano commented 3 months ago

I am trying to reproduce your paper, with the single cell data of authors Ho, Kinker, Jerby-Arnon and Stewart. I already solved the problem and the bug was in the versions of the Seurat and SeuratObject packages. Thank you very much for your reply!

SGMartin commented 3 months ago

@Silve-Ruano Yeah, we should have pinned both Seurat and SeuratObject versions but oh well. Glad it helped!