Pin both seurat and seuratobject versions

cnio-bu / beyondcell

Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq and Spatial Transcriptomics data.

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Pin both seurat and seuratobject versions #159

Open SGMartin opened 3 months ago

SGMartin commented 3 months ago

Some people are having issues due to them installing the correct Seurat version (v4) but pulling (I guess from conda) SeuratObject v5. This works with seurat due to compat. options but makes beyondcell fail when calculating the bcScore.

This should be fixed by either:

Pinning both Seurat and SeuratObject versions in the beyondcell recipe.
Upgrading Beyondcell to fully support v5 objects.

SGMartin commented 2 months ago

So after digging in the conda recipe I've found that the issue lies specifically with the noarch compilation, which is mostly pulled by Windows based installation. AFAIK, linux and macOS are compiled as standalone versions, so that's why we could not reproduce it on our end.