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cnio-bu / beyondcell

Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq and Spatial Transcriptomics data.
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Test failure:gs genes are in uppercase and sc genes are capitalized. #62

Closed SGMartin closed 1 year ago

SGMartin commented 1 year ago 
Warning (test-bcScore.R:187): warnings
gs genes are in uppercase and sc genes are capitalized. Please check your Seurat object and translate the genes if necessary.
Backtrace:
 1. testthat::expect_warning(...)
      at test-bcScore.R:187:2
 7. beyondcell::bcScore(pbmc, gs = gs.mouse)

Failure (test-bcScore.R:187): warnings
`bcScore(pbmc, gs = gs.mouse)` did not throw the expected warning.
SGMartin commented 1 year ago

Fixed in developing