Small implementation that take advantage of the seqSuite scripts. This allows for a final data object call the stats.{RUN}.csv that reports on the remaining reads or alignments. Further, a few changes to which files are designated as temp helps to reduce the total amount of reprocessing. Multihits and umitag sequences will now remain in the processData directory at the completion of the run.
Small implementation that take advantage of the seqSuite scripts. This allows for a final data object call the stats.{RUN}.csv that reports on the remaining reads or alignments. Further, a few changes to which files are designated as temp helps to reduce the total amount of reprocessing. Multihits and umitag sequences will now remain in the processData directory at the completion of the run.