Closed ressy closed 5 years ago
Actually it looks like there'd probably be more needed to make this functional. During a run the generate_state_matrix rule wants the .stat files that come from the demultiplex rule, I just noticed. Maybe concatenating everything and letting iGUIDE do the usual demultiplexing is best after all?
Closed in favor of #51, which includes additional functionality.
This updates the setup script to make --skip-demultiplexing allow an existing demultiDir and pass the config info along to get_sample_list. Fixes #40.