UMItags output needed by core_stat_matrix rule

cnobles / iGUIDE

Bioinformatic pipeline for identifying dsDNA breaks by marker based incorporation, such as breaks induced by designer nucleases like Cas9.

https://iguide.readthedocs.io/en/latest/

GNU General Public License v3.0

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UMItags output needed by core_stat_matrix rule #42

Closed ressy closed 5 years ago

ressy commented 5 years ago

Having UMItags : FALSE in the configuration gets the umitags rule excluded when the Snakefile is parsed, but there's still a later rule (core_stat_matrix in arch.rules) that expects {sample}.umitags.stat as input. Would some sort of call to WriteNullOutput to make stub .stat files do the trick for UMItag-less runs, maybe? I'm trying right now just touching empty files but I expect that'll confuse core_stat_matrix when it gets there.

ressy commented 5 years ago

I actually saw no problems due to the empty umitags.stat files in core_stat_matrix after all, so that seems to work fine.