Closed ressy closed 5 years ago
(Re-triggered the test with an empty commit since bioconda mysteriously gave a bunch of 404 errors the first time)
Closing in favor of #50, which incorporates the current changes in master and extends the functionality to coupling portion of rules.
This supplies a custom readNamePattern for the demulti and filt rules via the configuration, if one is present. (If not, that argument is left out of the command line strings so nothing changes.) I'm using this change to process reads that have the SRA's weird naming. Fixes #43.