If the path to the sampleInfo file (and possibly the supporting info file) are absolute paths, it can break the rules they are involved with. In the Snakefile, all supporting files should have their paths determined and then passed to rules.
Need to give the rules a look over as there are some parts that are antiquated (config required for demultiplexing...).
If the path to the sampleInfo file (and possibly the supporting info file) are absolute paths, it can break the rules they are involved with. In the Snakefile, all supporting files should have their paths determined and then passed to rules.
Need to give the rules a look over as there are some parts that are antiquated (config required for demultiplexing...).