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cnobles / iGUIDE

Bioinformatic pipeline for identifying dsDNA breaks by marker based incorporation, such as breaks induced by designer nucleases like Cas9.
https://iguide.readthedocs.io/en/latest/
GNU General Public License v3.0
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Absolute paths for sampleInfo and supp info can break rules #57

Closed cnobles closed 5 years ago

cnobles commented 5 years ago

If the path to the sampleInfo file (and possibly the supporting info file) are absolute paths, it can break the rules they are involved with. In the Snakefile, all supporting files should have their paths determined and then passed to rules.

Need to give the rules a look over as there are some parts that are antiquated (config required for demultiplexing...).

cnobles commented 5 years ago

Fixes implemented in #59.