:sparkles: add WGS background data for Goat - Githubissues

cnr-ibba / SMARTER-database

Smarter database repository

https://smarter-database.readthedocs.io/en/latest/

MIT License

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:sparkles: add WGS background data for Goat #86

Open bunop opened 1 year ago

bunop commented 1 year ago

Is your feature request related to a problem? Please describe. Add WGS background data for goat animals coming from Berihulay et al. 2019

Describe the solution you'd like Import WGS background data like we did for iSheep data

Describe alternatives you've considered Alternative could be different datasets or ignoring WGS data for Goats

Additional context

[ ] Check for ARS1 assembly (search SNPs relying on information in database)
[ ] Extract SNPs relying on probe position
[ ] Create metadata accordingly to publication and Supplementary Information
[ ] Convert into illumina top and import into database

bunop commented 1 year ago

This dataset is not in ARS1: the last SNP in chromosome 17 is in position 71877642, while the same chromosome is 71137785 basepairs length (GCA_001704415.2)