Closed bunop closed 2 years ago
Freebayes outputs are emitted as path, making difficult to use them in a pipeline, for example as input of bfctools/norm step
bfctools/norm
Freebayes output should return results as tuple (useful to use its output in a pipeline)
We could write a workaround in the pipeline, however this will annoying to maintain
freebayes/single
freebayes/parallel
freebayes/multi
Is your feature request related to a problem? Please describe
Freebayes outputs are emitted as path, making difficult to use them in a pipeline, for example as input of
bfctools/normstepDescribe the solution you'd like
Freebayes output should return results as tuple (useful to use its output in a pipeline)
Describe alternatives you've considered
We could write a workaround in the pipeline, however this will annoying to maintain
Additional context
Emit output as tuple for VCF / Index forfreebayes/singleEmit output as tuple for VCF / Index forfreebayes/parallelfreebayes/multi