:sparkles: deal with compressed genomes

cnr-ibba / nf-resequencing-mem

Nextflow resequencing pipeline with bwa-mem and freebayes

MIT License

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Closed bunop closed 2 years ago

bunop commented 2 years ago

Freebayes can't run on a compressed genome sequence. Add a new step to generate a FAI index to be used in freebayes step