cnr-ibba / nf-resequencing-mem

Nextflow resequencing pipeline with bwa-mem and freebayes
MIT License
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:sparkles: accept input data as samples data file #15

Closed bunop closed 2 years ago

bunop commented 2 years ago

This pipeline currently cannot deal with single end libraries. Moreover, is difficult to manage single and paired ends samples in the same run. Currently, nextflow pipelines accept input data from a sample files, where single and paired ends files are clearly stated and managed properly. Adapt this pipeline in order to accept data like this