:fire: can samtools/index be removed

cnr-ibba / nf-resequencing-mem

Nextflow resequencing pipeline with bwa-mem and freebayes

MIT License

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Closed bunop closed 5 months ago

bunop commented 8 months ago

In teory, I will index .bam files with markduplicates step. Can I remove samtools/index? or can I skip markduplicates indexing?