search

cobilab / falcon

A tool to infer metagenomic sample composition
GNU General Public License v3.0
21 stars 7 forks source link

Paired reads #7

Closed theo-allnutt-bioinformatics closed 4 years ago

theo-allnutt-bioinformatics commented 5 years ago

It is not clear from the documentation how FALCON handles paired reads. Can you clarify please. Thanks.

pratas commented 5 years ago

It does. The files: [FILE1]:[FILE2] stand for each one. It also allows to use multiple files from different paired ends. For example F1 and R1 with F2 and R2: ./FALCON F1.fq:R1.fq:F2.fq:R2.fq. I will add information for this in the README.am