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cobilab / smash

A tool to find and visualize rearrangements in DNA sequences
https://github.com/cobilab/smash
GNU General Public License v3.0
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Warning: file (null) was not deleted. #7

Open Karimi-81 opened 2 years ago

Karimi-81 commented 2 years ago

I faced with the following error when comparing two large mammalian genomes: Warning: file (null) was not deleted. the command was: ./SMASH pseudo_dog10.fa pseudo_cat10.fa do you have any idea about this error and how can I handle such analysis using smash? Thanks.

pratas commented 2 years ago

Dear,

this is a warning that will not affect the run. Basically, the file and permissions are not checked. Nevertheless, an optimized version of smash is available: smash++ (https://github.com/smortezah/smashpp)

Best regards, Diogo