In order to compute the correct deletions "delgramcountergood_rep" we
need to take the intersection between deletions in predictions and
deletions in references, however the code computed the difference
between the deletions in predictions and the counts in references (not the deletions in references).
In order to compute the correct deletions "delgramcountergood_rep" we need to take the intersection between deletions in predictions and deletions in references, however the code computed the difference between the deletions in predictions and the counts in references (not the deletions in references).