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codeneuro / neurofinder

benchmarking challenge for finding neurons in imaging data
http://neurofinder.codeneuro.org
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scale detection distance threshold by pixels? #21

Closed marius10p closed 8 years ago

marius10p commented 8 years ago

Most datasets are around ~1pix per micron, but the Losonczy lab ones are ~2pix per micron.

freeman-lab commented 8 years ago

Thanks for flagging this, will add a correction in the submission evaluation code.

freeman-lab commented 8 years ago

With commit https://github.com/codeneuro/neurofinder/commit/400f4b53f77dc67e82a5640e053b0d04ddaa794e, evaluation scripts are now all run at a threshold of 5 microns, which is translated to pixels given the metadata. All scores have been updated. Main effect was to increase the threshold for the Losonczy lab data, as you've pointed out. Thanks again for flagging this @marius10p !

marius10p commented 8 years ago

Could this change be implemented in the python comparison code as well please? I am talking about this command: neurofinder evaluate regions.json results.json

freeman-lab commented 8 years ago

moving discussion to https://github.com/codeneuro/neurofinder-python/issues/2