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codercahol / chlamy-ImPi

An image processing pipeline for time-series of Chlamydomonas reinhardtii fluorescence photos
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Getting interactive_demo running #2

Closed murraycutforth closed 8 months ago

murraycutforth commented 9 months ago

I was getting an indexerror on the interactive demo, after chasing it down I fixed it simply by changing the value of NUM_ROWS=10 in constants4blank.py, but to be honest I don't yet understand what all the constants mean, so I won't commit this change.

codercahol commented 9 months ago

I was frequently changing the constant values by hand to fit the tif file I was looking at in the moment. It's likely that there are only 10 rows in the image file used for the interactive demo (Which has a hard-coded input file iirc).

The funny business with the constants should go away once we integrate the new segmentation code

murraycutforth commented 8 months ago

Cool, I'll close this anyway as the interactive demo is super cool but not the focus for now.