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codercahol / chlamy-ImPi

An image processing pipeline for time-series of Chlamydomonas reinhardtii fluorescence photos
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Preprocess all data #28

Closed codercahol closed 5 months ago

codercahol commented 5 months ago

branch for odd fixes and running the database generation code on the cluster

murraycutforth commented 5 months ago

@codercahol okay so I'm hesitant to merge this in, because I'm running the database creation code now without all the try/except blocks around the assertions which are on this branch. I think the assertions are basically working correctly so they should be left in to catch errors.

codercahol commented 5 months ago

Ok great! There is still the date format commit in there which should still be applicable

codercahol commented 5 months ago

But that's like a one liner that I can just extract and add to yours

murraycutforth commented 5 months ago

Okay cool. Sorry about the file naming confusion. I do think having this on the cluster is really good, maybe in a week or two we can get together and set up a cron job on the cluster to create the database, and implement some correctness checks, like checking it creates identical results to the version running on my laptop?