@codercahol A couple of bits of info for you about the layout of code I've written:
I've added a new code sub-directory called "data_exploration" which has scripts I used to generate the plots on the wiki
I've re-named and slimmed down the image_processing.py file to run_well_segmentation_preprocessing.py, now this just calls the well segmentation library and caches a bunch of numpy arrays for future re-use. We can re-run this periodically when new data arrives.
I've started compartmentalising logic for creating masks and Fv/Fm values in new files in the lib directory
Because most of this is new files rather than edits, we can auto merge :) I'll just let you have a look first before pulling the trigger
@codercahol A couple of bits of info for you about the layout of code I've written:
image_processing.py
file torun_well_segmentation_preprocessing.py
, now this just calls the well segmentation library and caches a bunch of numpy arrays for future re-use. We can re-run this periodically when new data arrives.lib
directoryBecause most of this is new files rather than edits, we can auto merge :) I'll just let you have a look first before pulling the trigger