Open jimzhang629 opened 5 months ago
Several functions in utils.organize.py and data2bids.py use a "type" variable from the config.json, but the config.json does not have this.
For example, the below function from organize.py calls ieeg_config["type"] but this doesn't exist.
def prep_tsv(file_path: PathLike, task: str, pmatchz: str, ieeg_config: dict, bids_dir: PathLike) -> (str, pd.DataFrame): df = None for name, var in ieeg_config["headerData"]["channels"].items(): if name in file_path: df = mat2df(file_path, var) if "highpass_cutoff" in df.columns.to_list(): df = df.rename(columns={"highpass_cutoff": "high_cutoff"}) if "lowpass_cutoff" in df.columns.to_list(): df = df.rename(columns={"lowpass_cutoff": "low_cutoff"}) df["type"] = ieeg_config["type"] #uhhhh wtf is this??? df["units"] = ieeg_config["headerData"]["units"] new_row = pd.DataFrame( {"name": ["Trigger"], "high_cutoff": [1], "low_cutoff": [1000], "type": ["TRIG"], "units": ["uV"]}) df = pd.concat([df, new_row], ignore_index=True) df = pd.concat([df["name"], df["type"], df["units"], df["low_cutoff"], df["high_cutoff"]], axis=1) filename = op.join(bids_dir, "sub-{}".format(pmatchz), "sub-" + pmatchz + "_task-{}".format( task) + "_channels.tsv") return filename, df
Several functions in utils.organize.py and data2bids.py use a "type" variable from the config.json, but the config.json does not have this.
For example, the below function from organize.py calls ieeg_config["type"] but this doesn't exist.