Errors while trying to compile Genius-TCAD-open

[arvindajoy]

Hi

Thank you for releasing this code under an open source license.

I am however unable to compile the available code. I am using Petsc-3.1, gcc-4.1, g++-4.1

I get errors related to declaration of variable without any type. A sample of the errors is added below. I will be grateful for any help in resolving this.

Regards Arvind Ajoy www.arvindajoy.in

---

Waf: Entering directory `/home/arvind/Downloads/CogendaGenius/cogenda-Genius-TCAD-Open-7ae2374/build/default' [ 1/516] fc: src/contrib/qshep/qshep3d.f90 -> build/default/src/contrib/qshep/qshep3d.f90.1.o [ 11/532] cxx: build/default/src/sip/sipgeniuscmodule.cpp -> build/default/src/sip/sipgeniuscmodule.cpp.4.o [ 12/532] cxx: build/default/src/sip/sipgeniusSolverControl.cpp -> build/default/src/sip/sipgeniusSolverControl.cpp.4.o In file included from /home/arvind/Downloads/CogendaGenius/cogenda-Genius-TCAD-Open-7ae2374/src/sip/control.sip:114: /usr/include/scotch/parser.h:122: error: ISO C++ forbids declaration of ‘byte’ with no type /usr/include/scotch/parser.h:122: error: expected ‘;’ before ‘’ token /usr/include/scotch/parser.h:123: error: ISO C++ forbids declaration of ‘byte’ with no type /usr/include/scotch/parser.h:123: error: expected ‘;’ before ‘’ token /usr/include/scotch/parser.h:145: error: ‘INT’ does not name a type /usr/include/scotch/parser.h:172: error: ‘byte’ does not name a type In file included from /home/arvind/Downloads/CogendaGenius/cogenda-Genius-TCAD-Open-7ae2374/src/sip/control.sip:114: /usr/include/scotch/parser.h:67: error: multiple definition of ‘enum StratNodeType’ /usr/include/scotch/parser.h:67: error: previous definition here /usr/include/scotch/parser.h:68: error: conflicting declaration ‘STRATNODECONCAT’ /usr/include/scotch/parser.h:68: error: ‘STRATNODECONCAT’ has a previous declaration as ‘StratNodeType STRATNODECONCAT’ /usr/include/scotch/parser.h:69: error: conflicting declaration ‘STRATNODECOND’ /usr/include/scotch/parser.h:69: error: ‘STRATNODECOND’ has a previous declaration as ‘StratNodeType_ STRATNODECOND’

[arvindajoy]

I solved the above issue. Problem was with an incompatible compilation of Petsc.

The installation steps that worked finally are as under ..... (my system is Debian Wheezy). I think these steps might be useful for others trying to install this code.

MPICH2 Eliminate any remnants of MPICH before you install MPICH2 from debian wheezy repos. libmpich2-3 : 1.4.1-1+b1 libmpich2-dev : 1.4.1-1+b1

---

VTK

Debian packaged versions do not contain some of the headers that Genius requires. Fetch and compile vtk-5.4.2.

---

Petsc -3.1-p8 (fetch from the petsc webpage. Debian packaged petsc doesn't work)

My system is wheezy (i.e gcc 4.6). Genius does not work with version 4.6 (lots of errors!). Petsc pulls in mpich2 (if installed) by default. Thus, on a Wheezy system, the mpi compilers point to gcc 4.6. I export CC, CXX, FC to be the 4.4 versions ... but I dont think the compilation of petsc uses these (the configure log suggests that the 4.6 versions are being used). Somehow anyhow, things seem to work!

export CC=gcc-4.4 export CXX=g++-4.4 export FC=gfortran-4.4

export PETSC_DIR=/usr/local/tools/petsc-3.1-p8 export PETSC_ARCH=cogenda_shared-4.4

./configure --download-f-blas-lapack=1 --with-debugging=0 --with-umfpack=1 --download-umfpack=1 \ --with-superlu=1 --download-superlu=1 --with-superlu_dist=1 --download-superlu_dist=1 \ --with-blacs=1 --download-blacs=1 --with-scalapack=1 --download-scalapack=1 \ --with-parmetis=1 --download-parmetis=1 --with-mumps=1 --download-mumps=1 \ --COPTFLAGS="-O2" --CXXOPTFLAGS="-O2" --FOPTFLAGS="-O2" --useThreads=0 --with-shared=1

make PETSC_DIR=/usr/local/tools/petsc-3.1-p8 PETSC_ARCH=cogenda_shared-4.4 all

---

Set LD_LIBRARY_PATH correctly, so that petsc and vtk are found. Also, since Debian wheezy uses elibc, I need to add /usr/local/usr/lib/x86_64-linux-gnu to LIBRARY_PATH and /usr/include/x86_64-linux-gnu to CPATH. (http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=639214)

export LD_LIBRARY_PATH=/usr/local/tools/petsc-3.1-p8/cogenda_shared-4.4/lib/:/usr/local/tools/vtk-5.4.2/lib/vtk-5.4

export LIBRARY_PATH=/usr/lib/x86_64-linux-gnu export CPATH=/usr/include/x86_64-linux-gnu

---

Obtain waf and save a copy in the Genius directory.

Following http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=455285, make a change in src/contrib/dfise/dfise.cc - add #include

./waf-1.6.11 --prefix=$PWD --with-petsc-dir=/usr/local/tools/petsc-3.1-p8 --with-petsc-arch=cogenda_shared-4.4 \ --with-cgns-dir=/usr/lib --with-vtk-dir=/usr/local/tools/vtk-5.4.2 configure build install

export GENIUS_DIR=/usr/local/tools/cogenda-Genius-TCAD-Open-Vtk/ export PATH=$PATH:/usr/local/tools/cogenda-Genius-TCAD-Open-Vtk/bin/

---

Thanks again for this code!

[cogenda]

Thanks for the feedback. You may be interested in the new release we just uploaded.

[arvindajoy]

Thank you for the new release. I am unable to compile this release though.

The configure step complains that

Checking for library Petsc : no The configuration failed (complete log in /usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/build/default/config.log)

The corresponding log shows that

Checking for library Petsc err: test.cpp.1.o: In function main': test.cpp:(.text+0x0): multiple definition ofmain' /usr/lib/gcc/x86_64-linux-gnu/4.4.6/libgfortranbegin.a(fmain.o):(.text+0x0): first defined here /usr/lib/gcc/x86_64-linux-gnu/4.4.6/libgfortranbegin.a(fmain.o): In function main': (.text+0x26): undefined reference toMAIN__' collect2: ld returned 1 exit status

I have used the same steps that worked for the earlier version of Genius.

I would pleased to have your ideas on what may be wrong.

Regards

Arvind

[cogenda]

Hi,

Could you send me the complete config.log file? We tested it with GCC4.3/RHEL5, wondering how gcc4.4.6 differs...

regards, shenchen

On Mon, Feb 20, 2012 at 12:22 AM, arvindajoy < reply@reply.github.com

wrote:

Thank you for the new release. I am unable to compile this release though.

The configure step complains that

Checking for library Petsc : no The configuration failed (complete log in /usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/build/default/config.log)

The corresponding log shows that

Checking for library Petsc err: test.cpp.1.o: In function main': test.cpp:(.text+0x0): multiple definition ofmain' /usr/lib/gcc/x86_64-linux-gnu/4.4.6/libgfortranbegin.a(fmain.o):(.text+0x0): first defined here /usr/lib/gcc/x86_64-linux-gnu/4.4.6/libgfortranbegin.a(fmain.o): In function main': (.text+0x26): undefined reference toMAIN__' collect2: ld returned 1 exit status

I have used the same steps that worked for the earlier version of Genius.

I would pleased to have your ideas on what may be wrong.

Regards

Arvind

---

Reply to this email directly or view it on GitHub: https://github.com/cogenda/Genius-TCAD-Open/issues/8#issuecomment-4043012

[arvindajoy]

Hi

Thank you for the prompt reply. I have attached the complete config.log below. I am using gcc-4.4 on a Debian Wheezy (testing) system.

Regards Arvind

---

project genius configured on Sun Feb 19 11:56:15 2012 by

waf 1.6.11 (abi 98, python 20605f0 on linux2)

using ./waf-1.6.11

--prefix=/usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1 --with-petsc-dir=/usr/local/tools/petsc-3.1-p8 --with-petsc-arch=cogenda_shared-4.4 --with-cgns-dir=/usr/lib --with-vtk-dir=/usr/local/tools/vtk-5.4.2 configure

Setting top to

/usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1

Setting out to

/usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/build/default

Checking for 'icc' (c compiler) from /usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1: Not icc/icpc

not found

Checking for 'gcc' (c compiler) find program=['gcc', 'cc'] paths='' var='CC' -> 'gcc-4.4' find program=['ar'] paths=['/usr/local/tools/XCrySDen-1.5.21-bin-shared', '/usr/local/sbin', '/usr/local/bin', '/usr/sbin', '/usr/bin', '/sbin', '/bin', '/usr/local/tools/XCrySDen-1.5.21-bin-shared/scripts', '/usr/local/tools/XCrySDen-1.5.21-bin-shared/util'] var='AR' -> '/usr/bin/ar'

gcc-4.4

Checking for 'icpc' (c++ compiler) from /usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1: Not icc/icpc

not found

Checking for 'g++' (c++ compiler) find program=['g++', 'c++'] paths='' var='CXX' -> 'g++-4.4' (tool ar is already loaded, skipping)

g++-4.4

Checking for 'ifort' (fortran compiler) find program=['ifort'] paths='' var='FC' -> 'gfortran-4.4' from /usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1: cannot determine ifort version.

not found

Checking for 'gfortran' (fortran compiler) find program=['gfortran', 'g77'] paths='' var='FC' -> 'gfortran-4.4' (tool ar is already loaded, skipping)

gfortran-4.4

Checking for program git /usr/bin/git find program=['git'] paths=['/usr/local/tools/XCrySDen-1.5.21-bin-shared', '/usr/local/sbin', '/usr/local/bin', '/usr/sbin', '/usr/bin', '/sbin', '/bin', '/usr/local/tools/XCrySDen-1.5.21-bin-shared/scripts', '/usr/local/tools/XCrySDen-1.5.21-bin-shared/util'] var='GIT' -> '/usr/bin/git' ['/usr/bin/git', 'rev-parse', '--short', 'HEAD'] err: fatal: Not a git repository (or any of the parent directories): .git

---

Setting version string

20120219

Detecting optimization options ['gcc-4.4', '-O2', '-unroll', '-axSSE4.2,SSE4.1,SSSE3', '-msse3', 'test.c'] err: cc1: error: unrecognized command line option "-axSSE4.2,SSE4.1,SSSE3"

['gcc-4.4', '-O2', '-unroll', '-axS', '-msse3', 'test.c'] err: cc1: error: unrecognized command line option "-axS"

['gcc-4.4', '-O2', '-unroll', '-msse3', 'test.c']

-O2 -unroll -msse3

Checking for visibility flags ['g++-4.4', '-fvisibility-inlines-hidden', 'test.cc']

yes

Checking for size of double ==>

include

int main() { printf("%d", (int)sizeof(double)); return 0; } <== [1/3] c: build/default/.conf_check_365e155d4d9dee8cef66d6b8c3484fa5/test.c -> build/default/.conf_check_365e155d4d9dee8cef66d6b8c3484fa5/testbuild/test.c.1.o  ['gcc-4.4', '-fPIC', '-DLINUX=1', '-DDLLHOOK=1', '../test.c', '-c', '-o', 'test.c.1.o'] [2/3] cprogram: build/default/.conf_check_365e155d4d9dee8cef66d6b8c3484fa5/testbuild/test.c.1.o -> build/default/.conf_check_365e155d4d9dee8cef66d6b8c3484fa5/testbuild/testprog  ['gcc-4.4', '-ldl', '-Wl,--export-dynamic', 'test.c.1.o', '-o', '/usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/build/default/.conf_check_365e155d4d9dee8cef66d6b8c3484fa5/testbuild/testprog', '-Wl,-Bstatic', '-Wl,-Bdynamic'] [3/3] test_exec: build/default/.conf_check_365e155d4d9dee8cef66d6b8c3484fa5/testbuild/testprog  ['/usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/build/default/.conf_check_365e155d4d9dee8cef66d6b8c3484fa5/testbuild/testprog'] out: 8

yes

Checking for size of float ==>

include

int main() { printf("%d", (int)sizeof(float)); return 0; } <== [1/3] c: build/default/.conf_check_16c445e947e841bce40876284f65e640/test.c -> build/default/.conf_check_16c445e947e841bce40876284f65e640/testbuild/test.c.1.o  ['gcc-4.4', '-fPIC', '-DLINUX=1', '-DDLLHOOK=1', '-DSIZEOF_DOUBLE=8', '../test.c', '-c', '-o', 'test.c.1.o'] [2/3] cprogram: build/default/.conf_check_16c445e947e841bce40876284f65e640/testbuild/test.c.1.o -> build/default/.conf_check_16c445e947e841bce40876284f65e640/testbuild/testprog  ['gcc-4.4', '-ldl', '-Wl,--export-dynamic', 'test.c.1.o', '-o', '/usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/build/default/.conf_check_16c445e947e841bce40876284f65e640/testbuild/testprog', '-Wl,-Bstatic', '-Wl,-Bdynamic'] [3/3] test_exec: build/default/.conf_check_16c445e947e841bce40876284f65e640/testbuild/testprog  ['/usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/build/default/.conf_check_16c445e947e841bce40876284f65e640/testbuild/testprog'] out: 4

yes

Checking for size of int ==>

include

int main() { printf("%d", (int)sizeof(int)); return 0; } <== [1/3] c: build/default/.conf_check_89976af126331009cb9f11976585ed60/test.c -> build/default/.conf_check_89976af126331009cb9f11976585ed60/testbuild/test.c.1.o  ['gcc-4.4', '-fPIC', '-DLINUX=1', '-DDLLHOOK=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '../test.c', '-c', '-o', 'test.c.1.o'] [2/3] cprogram: build/default/.conf_check_89976af126331009cb9f11976585ed60/testbuild/test.c.1.o -> build/default/.conf_check_89976af126331009cb9f11976585ed60/testbuild/testprog  ['gcc-4.4', '-ldl', '-Wl,--export-dynamic', 'test.c.1.o', '-o', '/usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/build/default/.conf_check_89976af126331009cb9f11976585ed60/testbuild/testprog', '-Wl,-Bstatic', '-Wl,-Bdynamic'] [3/3] test_exec: build/default/.conf_check_89976af126331009cb9f11976585ed60/testbuild/testprog  ['/usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/build/default/.conf_check_89976af126331009cb9f11976585ed60/testbuild/testprog'] out: 4

yes

Checking for size of long int ==>

include

int main() { printf("%d", (int)sizeof(long int)); return 0; } <== [1/3] c: build/default/.conf_check_f64e3b1906bf028c587b0221f5454912/test.c -> build/default/.conf_check_f64e3b1906bf028c587b0221f5454912/testbuild/test.c.1.o  ['gcc-4.4', '-fPIC', '-DLINUX=1', '-DDLLHOOK=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '../test.c', '-c', '-o', 'test.c.1.o'] [2/3] cprogram: build/default/.conf_check_f64e3b1906bf028c587b0221f5454912/testbuild/test.c.1.o -> build/default/.conf_check_f64e3b1906bf028c587b0221f5454912/testbuild/testprog  ['gcc-4.4', '-ldl', '-Wl,--export-dynamic', 'test.c.1.o', '-o', '/usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/build/default/.conf_check_f64e3b1906bf028c587b0221f5454912/testbuild/testprog', '-Wl,-Bstatic', '-Wl,-Bdynamic'] [3/3] test_exec: build/default/.conf_check_f64e3b1906bf028c587b0221f5454912/testbuild/testprog  ['/usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/build/default/.conf_check_f64e3b1906bf028c587b0221f5454912/testbuild/testprog'] out: 8

yes

Checking for size of long long int ==>

include

int main() { printf("%d", (int)sizeof(long long int)); return 0; } <== [1/3] c: build/default/.conf_check_1123a5420e665b9a8042281e69f1536e/test.c -> build/default/.conf_check_1123a5420e665b9a8042281e69f1536e/testbuild/test.c.1.o  ['gcc-4.4', '-fPIC', '-DLINUX=1', '-DDLLHOOK=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '../test.c', '-c', '-o', 'test.c.1.o'] [2/3] cprogram: build/default/.conf_check_1123a5420e665b9a8042281e69f1536e/testbuild/test.c.1.o -> build/default/.conf_check_1123a5420e665b9a8042281e69f1536e/testbuild/testprog  ['gcc-4.4', '-ldl', '-Wl,--export-dynamic', 'test.c.1.o', '-o', '/usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/build/default/.conf_check_1123a5420e665b9a8042281e69f1536e/testbuild/testprog', '-Wl,-Bstatic', '-Wl,-Bdynamic'] [3/3] test_exec: build/default/.conf_check_1123a5420e665b9a8042281e69f1536e/testbuild/testprog  ['/usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/build/default/.conf_check_1123a5420e665b9a8042281e69f1536e/testbuild/testprog'] out: 8

yes

Checking for size of short int ==>

include

int main() { printf("%d", (int)sizeof(short int)); return 0; } <== [1/3] c: build/default/.conf_check_46e78608be599b765d3f68d6330b4865/test.c -> build/default/.conf_check_46e78608be599b765d3f68d6330b4865/testbuild/test.c.1.o  ['gcc-4.4', '-fPIC', '-DLINUX=1', '-DDLLHOOK=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '../test.c', '-c', '-o', 'test.c.1.o'] [2/3] cprogram: build/default/.conf_check_46e78608be599b765d3f68d6330b4865/testbuild/test.c.1.o -> build/default/.conf_check_46e78608be599b765d3f68d6330b4865/testbuild/testprog  ['gcc-4.4', '-ldl', '-Wl,--export-dynamic', 'test.c.1.o', '-o', '/usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/build/default/.conf_check_46e78608be599b765d3f68d6330b4865/testbuild/testprog', '-Wl,-Bstatic', '-Wl,-Bdynamic'] [3/3] test_exec: build/default/.conf_check_46e78608be599b765d3f68d6330b4865/testbuild/testprog  ['/usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/build/default/.conf_check_46e78608be599b765d3f68d6330b4865/testbuild/testprog'] out: 2

yes

Checking for size of void * ==>

include

int main() { printf("%d", (int)sizeof(void *)); return 0; } <== [1/3] c: build/default/.conf_check_15f81e4a096bafdd7c37a85965ef9080/test.c -> build/default/.conf_check_15f81e4a096bafdd7c37a85965ef9080/testbuild/test.c.1.o  ['gcc-4.4', '-fPIC', '-DLINUX=1', '-DDLLHOOK=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '../test.c', '-c', '-o', 'test.c.1.o'] [2/3] cprogram: build/default/.conf_check_15f81e4a096bafdd7c37a85965ef9080/testbuild/test.c.1.o -> build/default/.conf_check_15f81e4a096bafdd7c37a85965ef9080/testbuild/testprog  ['gcc-4.4', '-ldl', '-Wl,--export-dynamic', 'test.c.1.o', '-o', '/usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/build/default/.conf_check_15f81e4a096bafdd7c37a85965ef9080/testbuild/testprog', '-Wl,-Bstatic', '-Wl,-Bdynamic'] [3/3] test_exec: build/default/.conf_check_15f81e4a096bafdd7c37a85965ef9080/testbuild/testprog  ['/usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/build/default/.conf_check_15f81e4a096bafdd7c37a85965ef9080/testbuild/testprog'] out: 8

yes

Checking for header fcntl.h ==>

include

int main() { return 0; }

<== [1/2] c: build/default/.conf_check_f92571f0c57ba826932f09528ff69c29/test.c -> build/default/.conf_check_f92571f0c57ba826932f09528ff69c29/testbuild/test.c.1.o  ['gcc-4.4', '-fPIC', '-DLINUX=1', '-DDLLHOOK=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '../test.c', '-c', '-o', 'test.c.1.o'] [2/2] cprogram: build/default/.conf_check_f92571f0c57ba826932f09528ff69c29/testbuild/test.c.1.o -> build/default/.conf_check_f92571f0c57ba826932f09528ff69c29/testbuild/testprog  ['gcc-4.4', '-ldl', '-Wl,--export-dynamic', 'test.c.1.o', '-o', '/usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/build/default/.conf_check_f92571f0c57ba826932f09528ff69c29/testbuild/testprog', '-Wl,-Bstatic', '-Wl,-Bdynamic']

yes

Checking for header float.h ==>

include

int main() { return 0; }

<== [1/2] c: build/default/.conf_check_d147df756601925e1a8914768171abb6/test.c -> build/default/.conf_check_d147df756601925e1a8914768171abb6/testbuild/test.c.1.o  ['gcc-4.4', '-fPIC', '-DLINUX=1', '-DDLLHOOK=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '../test.c', '-c', '-o', 'test.c.1.o'] [2/2] cprogram: build/default/.conf_check_d147df756601925e1a8914768171abb6/testbuild/test.c.1.o -> build/default/.conf_check_d147df756601925e1a8914768171abb6/testbuild/testprog  ['gcc-4.4', '-ldl', '-Wl,--export-dynamic', 'test.c.1.o', '-o', '/usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/build/default/.conf_check_d147df756601925e1a8914768171abb6/testbuild/testprog', '-Wl,-Bstatic', '-Wl,-Bdynamic']

yes

Checking for header fenv.h ==>

include

int main() { return 0; }

<== [1/2] c: build/default/.conf_check_6047d6384c9baeb7a15c177b1c393d87/test.c -> build/default/.conf_check_6047d6384c9baeb7a15c177b1c393d87/testbuild/test.c.1.o  ['gcc-4.4', '-fPIC', '-DLINUX=1', '-DDLLHOOK=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '../test.c', '-c', '-o', 'test.c.1.o'] [2/2] cprogram: build/default/.conf_check_6047d6384c9baeb7a15c177b1c393d87/testbuild/test.c.1.o -> build/default/.conf_check_6047d6384c9baeb7a15c177b1c393d87/testbuild/testprog  ['gcc-4.4', '-ldl', '-Wl,--export-dynamic', 'test.c.1.o', '-o', '/usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/build/default/.conf_check_6047d6384c9baeb7a15c177b1c393d87/testbuild/testprog', '-Wl,-Bstatic', '-Wl,-Bdynamic']

yes

Checking for header limits.h ==>

include

int main() { return 0; }

<== [1/2] c: build/default/.conf_check_e76f8508d51ba0ee2c91898f11317e65/test.c -> build/default/.conf_check_e76f8508d51ba0ee2c91898f11317e65/testbuild/test.c.1.o  ['gcc-4.4', '-fPIC', '-DLINUX=1', '-DDLLHOOK=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '../test.c', '-c', '-o', 'test.c.1.o'] [2/2] cprogram: build/default/.conf_check_e76f8508d51ba0ee2c91898f11317e65/testbuild/test.c.1.o -> build/default/.conf_check_e76f8508d51ba0ee2c91898f11317e65/testbuild/testprog  ['gcc-4.4', '-ldl', '-Wl,--export-dynamic', 'test.c.1.o', '-o', '/usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/build/default/.conf_check_e76f8508d51ba0ee2c91898f11317e65/testbuild/testprog', '-Wl,-Bstatic', '-Wl,-Bdynamic']

yes

Checking for header stddef.h ==>

include

int main() { return 0; }

<== [1/2] c: build/default/.conf_check_7d483127e49eed51ff00069e83bc9a8f/test.c -> build/default/.conf_check_7d483127e49eed51ff00069e83bc9a8f/testbuild/test.c.1.o  ['gcc-4.4', '-fPIC', '-DLINUX=1', '-DDLLHOOK=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '../test.c', '-c', '-o', 'test.c.1.o'] [2/2] cprogram: build/default/.conf_check_7d483127e49eed51ff00069e83bc9a8f/testbuild/test.c.1.o -> build/default/.conf_check_7d483127e49eed51ff00069e83bc9a8f/testbuild/testprog  ['gcc-4.4', '-ldl', '-Wl,--export-dynamic', 'test.c.1.o', '-o', '/usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/build/default/.conf_check_7d483127e49eed51ff00069e83bc9a8f/testbuild/testprog', '-Wl,-Bstatic', '-Wl,-Bdynamic']

yes

Checking for header stdlib.h ==>

include

int main() { return 0; }

<== [1/2] c: build/default/.conf_check_8ec9c6f3526d3d2a4653131d360987cb/test.c -> build/default/.conf_check_8ec9c6f3526d3d2a4653131d360987cb/testbuild/test.c.1.o  ['gcc-4.4', '-fPIC', '-DLINUX=1', '-DDLLHOOK=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '../test.c', '-c', '-o', 'test.c.1.o'] [2/2] cprogram: build/default/.conf_check_8ec9c6f3526d3d2a4653131d360987cb/testbuild/test.c.1.o -> build/default/.conf_check_8ec9c6f3526d3d2a4653131d360987cb/testbuild/testprog  ['gcc-4.4', '-ldl', '-Wl,--export-dynamic', 'test.c.1.o', '-o', '/usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/build/default/.conf_check_8ec9c6f3526d3d2a4653131d360987cb/testbuild/testprog', '-Wl,-Bstatic', '-Wl,-Bdynamic']

yes

Checking for header string.h ==>

include

int main() { return 0; }

<== [1/2] c: build/default/.conf_check_e97ca4d4cc8aaacfc19de383af4b493a/test.c -> build/default/.conf_check_e97ca4d4cc8aaacfc19de383af4b493a/testbuild/test.c.1.o  ['gcc-4.4', '-fPIC', '-DLINUX=1', '-DDLLHOOK=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '-DHAVE_STDLIB_H=1', '../test.c', '-c', '-o', 'test.c.1.o'] [2/2] cprogram: build/default/.conf_check_e97ca4d4cc8aaacfc19de383af4b493a/testbuild/test.c.1.o -> build/default/.conf_check_e97ca4d4cc8aaacfc19de383af4b493a/testbuild/testprog  ['gcc-4.4', '-ldl', '-Wl,--export-dynamic', 'test.c.1.o', '-o', '/usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/build/default/.conf_check_e97ca4d4cc8aaacfc19de383af4b493a/testbuild/testprog', '-Wl,-Bstatic', '-Wl,-Bdynamic']

yes

Checking for header stdio.h ==>

include

int main() { return 0; }

<== [1/2] c: build/default/.conf_check_095adbcb6fcbecc99eb8a27982d649e4/test.c -> build/default/.conf_check_095adbcb6fcbecc99eb8a27982d649e4/testbuild/test.c.1.o  ['gcc-4.4', '-fPIC', '-DLINUX=1', '-DDLLHOOK=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '-DHAVE_STDLIB_H=1', '-DHAVE_STRING_H=1', '../test.c', '-c', '-o', 'test.c.1.o'] [2/2] cprogram: build/default/.conf_check_095adbcb6fcbecc99eb8a27982d649e4/testbuild/test.c.1.o -> build/default/.conf_check_095adbcb6fcbecc99eb8a27982d649e4/testbuild/testprog  ['gcc-4.4', '-ldl', '-Wl,--export-dynamic', 'test.c.1.o', '-o', '/usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/build/default/.conf_check_095adbcb6fcbecc99eb8a27982d649e4/testbuild/testprog', '-Wl,-Bstatic', '-Wl,-Bdynamic']

yes

Checking for header assert.h ==>

include

int main() { return 0; }

<== [1/2] c: build/default/.conf_check_5334ea13d34f3c2058f0659c47a21137/test.c -> build/default/.conf_check_5334ea13d34f3c2058f0659c47a21137/testbuild/test.c.1.o  ['gcc-4.4', '-fPIC', '-DLINUX=1', '-DDLLHOOK=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '-DHAVE_STDLIB_H=1', '-DHAVE_STRING_H=1', '-DHAVE_STDIO_H=1', '../test.c', '-c', '-o', 'test.c.1.o'] [2/2] cprogram: build/default/.conf_check_5334ea13d34f3c2058f0659c47a21137/testbuild/test.c.1.o -> build/default/.conf_check_5334ea13d34f3c2058f0659c47a21137/testbuild/testprog  ['gcc-4.4', '-ldl', '-Wl,--export-dynamic', 'test.c.1.o', '-o', '/usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/build/default/.conf_check_5334ea13d34f3c2058f0659c47a21137/testbuild/testprog', '-Wl,-Bstatic', '-Wl,-Bdynamic']

yes

Checking for header sys/time.h ==>

include <sys/time.h>

int main() { return 0; }

<== [1/2] c: build/default/.conf_check_52d33f698d069ccf16ef6a484056653c/test.c -> build/default/.conf_check_52d33f698d069ccf16ef6a484056653c/testbuild/test.c.1.o  ['gcc-4.4', '-fPIC', '-DLINUX=1', '-DDLLHOOK=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '-DHAVE_STDLIB_H=1', '-DHAVE_STRING_H=1', '-DHAVE_STDIO_H=1', '-DHAVE_ASSERT_H=1', '../test.c', '-c', '-o', 'test.c.1.o'] [2/2] cprogram: build/default/.conf_check_52d33f698d069ccf16ef6a484056653c/testbuild/test.c.1.o -> build/default/.conf_check_52d33f698d069ccf16ef6a484056653c/testbuild/testprog  ['gcc-4.4', '-ldl', '-Wl,--export-dynamic', 'test.c.1.o', '-o', '/usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/build/default/.conf_check_52d33f698d069ccf16ef6a484056653c/testbuild/testprog', '-Wl,-Bstatic', '-Wl,-Bdynamic']

yes

Checking for header sys/types.h ==>

include <sys/types.h>

int main() { return 0; }

<== [1/2] c: build/default/.conf_check_64d68a5ad8c89e20657cb3e94f3dae5d/test.c -> build/default/.conf_check_64d68a5ad8c89e20657cb3e94f3dae5d/testbuild/test.c.1.o  ['gcc-4.4', '-fPIC', '-DLINUX=1', '-DDLLHOOK=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '-DHAVE_STDLIB_H=1', '-DHAVE_STRING_H=1', '-DHAVE_STDIO_H=1', '-DHAVE_ASSERT_H=1', '-DHAVE_SYS_TIME_H=1', '../test.c', '-c', '-o', 'test.c.1.o'] [2/2] cprogram: build/default/.conf_check_64d68a5ad8c89e20657cb3e94f3dae5d/testbuild/test.c.1.o -> build/default/.conf_check_64d68a5ad8c89e20657cb3e94f3dae5d/testbuild/testprog  ['gcc-4.4', '-ldl', '-Wl,--export-dynamic', 'test.c.1.o', '-o', '/usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/build/default/.conf_check_64d68a5ad8c89e20657cb3e94f3dae5d/testbuild/testprog', '-Wl,-Bstatic', '-Wl,-Bdynamic']

yes

Checking for header sys/stat.h ==>

include <sys/stat.h>

int main() { return 0; }

<== [1/2] c: build/default/.conf_check_989074c31bbc8d033d35b6062bda0770/test.c -> build/default/.conf_check_989074c31bbc8d033d35b6062bda0770/testbuild/test.c.1.o  ['gcc-4.4', '-fPIC', '-DLINUX=1', '-DDLLHOOK=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '-DHAVE_STDLIB_H=1', '-DHAVE_STRING_H=1', '-DHAVE_STDIO_H=1', '-DHAVE_ASSERT_H=1', '-DHAVE_SYS_TIME_H=1', '-DHAVE_SYS_TYPES_H=1', '../test.c', '-c', '-o', 'test.c.1.o'] [2/2] cprogram: build/default/.conf_check_989074c31bbc8d033d35b6062bda0770/testbuild/test.c.1.o -> build/default/.conf_check_989074c31bbc8d033d35b6062bda0770/testbuild/testprog  ['gcc-4.4', '-ldl', '-Wl,--export-dynamic', 'test.c.1.o', '-o', '/usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/build/default/.conf_check_989074c31bbc8d033d35b6062bda0770/testbuild/testprog', '-Wl,-Bstatic', '-Wl,-Bdynamic']

yes

Checking for header stdlib.h ==>

include

int main() { return 0; }

<== [1/2] c: build/default/.conf_check_8ec9c6f3526d3d2a4653131d360987cb/test.c -> build/default/.conf_check_8ec9c6f3526d3d2a4653131d360987cb/testbuild/test.c.1.o  ['gcc-4.4', '-fPIC', '-DLINUX=1', '-DDLLHOOK=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '-DHAVE_STRING_H=1', '-DHAVE_STDIO_H=1', '-DHAVE_ASSERT_H=1', '-DHAVE_SYS_TIME_H=1', '-DHAVE_SYS_TYPES_H=1', '-DHAVE_SYS_STAT_H=1', '../test.c', '-c', '-o', 'test.c.1.o'] [2/2] cprogram: build/default/.conf_check_8ec9c6f3526d3d2a4653131d360987cb/testbuild/test.c.1.o -> build/default/.conf_check_8ec9c6f3526d3d2a4653131d360987cb/testbuild/testprog  ['gcc-4.4', '-ldl', '-Wl,--export-dynamic', 'test.c.1.o', '-o', '/usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/build/default/.conf_check_8ec9c6f3526d3d2a4653131d360987cb/testbuild/testprog', '-Wl,-Bstatic', '-Wl,-Bdynamic']

yes

Checking for header string.h ==>

include

int main() { return 0; }

<== [1/2] c: build/default/.conf_check_e97ca4d4cc8aaacfc19de383af4b493a/test.c -> build/default/.conf_check_e97ca4d4cc8aaacfc19de383af4b493a/testbuild/test.c.1.o  ['gcc-4.4', '-fPIC', '-DLINUX=1', '-DDLLHOOK=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '-DHAVE_STDIO_H=1', '-DHAVE_ASSERT_H=1', '-DHAVE_SYS_TIME_H=1', '-DHAVE_SYS_TYPES_H=1', '-DHAVE_SYS_STAT_H=1', '-DHAVE_STDLIB_H=1', '../test.c', '-c', '-o', 'test.c.1.o'] [2/2] cprogram: build/default/.conf_check_e97ca4d4cc8aaacfc19de383af4b493a/testbuild/test.c.1.o -> build/default/.conf_check_e97ca4d4cc8aaacfc19de383af4b493a/testbuild/testprog  ['gcc-4.4', '-ldl', '-Wl,--export-dynamic', 'test.c.1.o', '-o', '/usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/build/default/.conf_check_e97ca4d4cc8aaacfc19de383af4b493a/testbuild/testprog', '-Wl,-Bstatic', '-Wl,-Bdynamic']

yes

Checking for header memory.h ==>

include

int main() { return 0; }

<== [1/2] c: build/default/.conf_check_e358da96f8e92bf51dbddc57dec34bad/test.c -> build/default/.conf_check_e358da96f8e92bf51dbddc57dec34bad/testbuild/test.c.1.o  ['gcc-4.4', '-fPIC', '-DLINUX=1', '-DDLLHOOK=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '-DHAVE_STDIO_H=1', '-DHAVE_ASSERT_H=1', '-DHAVE_SYS_TIME_H=1', '-DHAVE_SYS_TYPES_H=1', '-DHAVE_SYS_STAT_H=1', '-DHAVE_STDLIB_H=1', '-DHAVE_STRING_H=1', '../test.c', '-c', '-o', 'test.c.1.o'] [2/2] cprogram: build/default/.conf_check_e358da96f8e92bf51dbddc57dec34bad/testbuild/test.c.1.o -> build/default/.conf_check_e358da96f8e92bf51dbddc57dec34bad/testbuild/testprog  ['gcc-4.4', '-ldl', '-Wl,--export-dynamic', 'test.c.1.o', '-o', '/usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/build/default/.conf_check_e358da96f8e92bf51dbddc57dec34bad/testbuild/testprog', '-Wl,-Bstatic', '-Wl,-Bdynamic']

yes

Checking for header strings.h ==>

include

int main() { return 0; }

<== [1/2] c: build/default/.conf_check_23900e189ef25f8769b6878c33ac669e/test.c -> build/default/.conf_check_23900e189ef25f8769b6878c33ac669e/testbuild/test.c.1.o  ['gcc-4.4', '-fPIC', '-DLINUX=1', '-DDLLHOOK=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '-DHAVE_STDIO_H=1', '-DHAVE_ASSERT_H=1', '-DHAVE_SYS_TIME_H=1', '-DHAVE_SYS_TYPES_H=1', '-DHAVE_SYS_STAT_H=1', '-DHAVE_STDLIB_H=1', '-DHAVE_STRING_H=1', '-DHAVE_MEMORY_H=1', '../test.c', '-c', '-o', 'test.c.1.o'] [2/2] cprogram: build/default/.conf_check_23900e189ef25f8769b6878c33ac669e/testbuild/test.c.1.o -> build/default/.conf_check_23900e189ef25f8769b6878c33ac669e/testbuild/testprog  ['gcc-4.4', '-ldl', '-Wl,--export-dynamic', 'test.c.1.o', '-o', '/usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/build/default/.conf_check_23900e189ef25f8769b6878c33ac669e/testbuild/testprog', '-Wl,-Bstatic', '-Wl,-Bdynamic']

yes

Checking for header inttypes.h ==>

include

int main() { return 0; }

<== [1/2] c: build/default/.conf_check_7b3094287dc0e7dccba356f86f5ac28e/test.c -> build/default/.conf_check_7b3094287dc0e7dccba356f86f5ac28e/testbuild/test.c.1.o  ['gcc-4.4', '-fPIC', '-DLINUX=1', '-DDLLHOOK=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '-DHAVE_STDIO_H=1', '-DHAVE_ASSERT_H=1', '-DHAVE_SYS_TIME_H=1', '-DHAVE_SYS_TYPES_H=1', '-DHAVE_SYS_STAT_H=1', '-DHAVE_STDLIB_H=1', '-DHAVE_STRING_H=1', '-DHAVE_MEMORY_H=1', '-DHAVE_STRINGS_H=1', '../test.c', '-c', '-o', 'test.c.1.o'] [2/2] cprogram: build/default/.conf_check_7b3094287dc0e7dccba356f86f5ac28e/testbuild/test.c.1.o -> build/default/.conf_check_7b3094287dc0e7dccba356f86f5ac28e/testbuild/testprog  ['gcc-4.4', '-ldl', '-Wl,--export-dynamic', 'test.c.1.o', '-o', '/usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/build/default/.conf_check_7b3094287dc0e7dccba356f86f5ac28e/testbuild/testprog', '-Wl,-Bstatic', '-Wl,-Bdynamic']

yes

Checking for header stdint.h ==>

include

int main() { return 0; }

<== [1/2] c: build/default/.conf_check_a7fccd96869f90efd4922c9b9961b095/test.c -> build/default/.conf_check_a7fccd96869f90efd4922c9b9961b095/testbuild/test.c.1.o  ['gcc-4.4', '-fPIC', '-DLINUX=1', '-DDLLHOOK=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '-DHAVE_STDIO_H=1', '-DHAVE_ASSERT_H=1', '-DHAVE_SYS_TIME_H=1', '-DHAVE_SYS_TYPES_H=1', '-DHAVE_SYS_STAT_H=1', '-DHAVE_STDLIB_H=1', '-DHAVE_STRING_H=1', '-DHAVE_MEMORY_H=1', '-DHAVE_STRINGS_H=1', '-DHAVE_INTTYPES_H=1', '../test.c', '-c', '-o', 'test.c.1.o'] [2/2] cprogram: build/default/.conf_check_a7fccd96869f90efd4922c9b9961b095/testbuild/test.c.1.o -> build/default/.conf_check_a7fccd96869f90efd4922c9b9961b095/testbuild/testprog  ['gcc-4.4', '-ldl', '-Wl,--export-dynamic', 'test.c.1.o', '-o', '/usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/build/default/.conf_check_a7fccd96869f90efd4922c9b9961b095/testbuild/testprog', '-Wl,-Bstatic', '-Wl,-Bdynamic']

yes

Checking for header unistd.h ==>

include

int main() { return 0; }

<== [1/2] c: build/default/.conf_check_ae1135b278b21799f395354fef4a52b7/test.c -> build/default/.conf_check_ae1135b278b21799f395354fef4a52b7/testbuild/test.c.1.o  ['gcc-4.4', '-fPIC', '-DLINUX=1', '-DDLLHOOK=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '-DHAVE_STDIO_H=1', '-DHAVE_ASSERT_H=1', '-DHAVE_SYS_TIME_H=1', '-DHAVE_SYS_TYPES_H=1', '-DHAVE_SYS_STAT_H=1', '-DHAVE_STDLIB_H=1', '-DHAVE_STRING_H=1', '-DHAVE_MEMORY_H=1', '-DHAVE_STRINGS_H=1', '-DHAVE_INTTYPES_H=1', '-DHAVE_STDINT_H=1', '../test.c', '-c', '-o', 'test.c.1.o'] [2/2] cprogram: build/default/.conf_check_ae1135b278b21799f395354fef4a52b7/testbuild/test.c.1.o -> build/default/.conf_check_ae1135b278b21799f395354fef4a52b7/testbuild/testprog  ['gcc-4.4', '-ldl', '-Wl,--export-dynamic', 'test.c.1.o', '-o', '/usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/build/default/.conf_check_ae1135b278b21799f395354fef4a52b7/testbuild/testprog', '-Wl,-Bstatic', '-Wl,-Bdynamic']

yes

Checking for header tr1/unordered_map ==>

include <tr1/unordered_map>

int main() { return 0; }

<== [1/2] cxx: build/default/.conf_check_892e38a76b54e3260fe356b3b37ebb31/test.cpp -> build/default/.conf_check_892e38a76b54e3260fe356b3b37ebb31/testbuild/test.cpp.1.o  ['g++-4.4', '-fPIC', '-DLINUX=1', '-DDLLHOOK=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '-DHAVE_STDIO_H=1', '-DHAVE_ASSERT_H=1', '-DHAVE_SYS_TIME_H=1', '-DHAVE_SYS_TYPES_H=1', '-DHAVE_SYS_STAT_H=1', '-DHAVE_STDLIB_H=1', '-DHAVE_STRING_H=1', '-DHAVE_MEMORY_H=1', '-DHAVE_STRINGS_H=1', '-DHAVE_INTTYPES_H=1', '-DHAVE_STDINT_H=1', '-DHAVE_UNISTD_H=1', '../test.cpp', '-c', '-o', 'test.cpp.1.o'] [2/2] cxxprogram: build/default/.conf_check_892e38a76b54e3260fe356b3b37ebb31/testbuild/test.cpp.1.o -> build/default/.conf_check_892e38a76b54e3260fe356b3b37ebb31/testbuild/testprog  ['g++-4.4', '-ldl', '-Wl,--export-dynamic', 'test.cpp.1.o', '-o', '/usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/build/default/.conf_check_892e38a76b54e3260fe356b3b37ebb31/testbuild/testprog', '-Wl,-Bstatic', '-Wl,-Bdynamic']

yes

Checking for header tr1/unordered_set ==>

include <tr1/unordered_set>

int main() { return 0; }

<== [1/2] cxx: build/default/.conf_check_aadff3e9dec9e03f453f5141d542a08b/test.cpp -> build/default/.conf_check_aadff3e9dec9e03f453f5141d542a08b/testbuild/test.cpp.1.o  ['g++-4.4', '-fPIC', '-DLINUX=1', '-DDLLHOOK=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '-DHAVE_STDIO_H=1', '-DHAVE_ASSERT_H=1', '-DHAVE_SYS_TIME_H=1', '-DHAVE_SYS_TYPES_H=1', '-DHAVE_SYS_STAT_H=1', '-DHAVE_STDLIB_H=1', '-DHAVE_STRING_H=1', '-DHAVE_MEMORY_H=1', '-DHAVE_STRINGS_H=1', '-DHAVE_INTTYPES_H=1', '-DHAVE_STDINT_H=1', '-DHAVE_UNISTD_H=1', '-DHAVE_TR1_UNORDERED_MAP=1', '../test.cpp', '-c', '-o', 'test.cpp.1.o'] [2/2] cxxprogram: build/default/.conf_check_aadff3e9dec9e03f453f5141d542a08b/testbuild/test.cpp.1.o -> build/default/.conf_check_aadff3e9dec9e03f453f5141d542a08b/testbuild/testprog  ['g++-4.4', '-ldl', '-Wl,--export-dynamic', 'test.cpp.1.o', '-o', '/usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/build/default/.conf_check_aadff3e9dec9e03f453f5141d542a08b/testbuild/testprog', '-Wl,-Bstatic', '-Wl,-Bdynamic']

yes

Checking for header unordered_map ==>

include

int main() { return 0; }

<== [1/2] cxx: build/default/.conf_check_0256874189748743c3970fc48efcf945/test.cpp -> build/default/.conf_check_0256874189748743c3970fc48efcf945/testbuild/test.cpp.1.o  ['g++-4.4', '-fPIC', '-DLINUX=1', '-DDLLHOOK=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '-DHAVE_STDIO_H=1', '-DHAVE_ASSERT_H=1', '-DHAVE_SYS_TIME_H=1', '-DHAVE_SYS_TYPES_H=1', '-DHAVE_SYS_STAT_H=1', '-DHAVE_STDLIB_H=1', '-DHAVE_STRING_H=1', '-DHAVE_MEMORY_H=1', '-DHAVE_STRINGS_H=1', '-DHAVE_INTTYPES_H=1', '-DHAVE_STDINT_H=1', '-DHAVE_UNISTD_H=1', '-DHAVE_TR1_UNORDERED_MAP=1', '-DHAVE_TR1_UNORDERED_SET=1', '../test.cpp', '-c', '-o', 'test.cpp.1.o'] err: In file included from /usr/include/c++/4.4/unordered_map:35, from ../test.cpp:1: /usr/include/c++/4.4/c++0x_warning.h:31:2: error: #error This file requires compiler and library support for the upcoming ISO C++ standard, C++0x. This support is currently experimental, and must be enabled with the -std=c++0x or -std=gnu++0x compiler options.

from /usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1: Test does not build: Traceback (most recent call last): File "/usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/.waf-1.6.11-30618c54883417962c38f5d395f83584/waflib/Tools/c_config.py", line 445, in run_c_code bld.compile() File "/usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/.waf-1.6.11-30618c54883417962c38f5d395f83584/waflib/Build.py", line 190, in compile raise Errors.BuildError(self.producer.error) BuildError: Build failed -> task in 'testprog' failed (exit status 1): {task 29694480: cxx test.cpp -> test.cpp.1.o} ['g++-4.4', '-fPIC', '-DLINUX=1', '-DDLLHOOK=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '-DHAVE_STDIO_H=1', '-DHAVE_ASSERT_H=1', '-DHAVE_SYS_TIME_H=1', '-DHAVE_SYS_TYPES_H=1', '-DHAVE_SYS_STAT_H=1', '-DHAVE_STDLIB_H=1', '-DHAVE_STRING_H=1', '-DHAVE_MEMORY_H=1', '-DHAVE_STRINGS_H=1', '-DHAVE_INTTYPES_H=1', '-DHAVE_STDINT_H=1', '-DHAVE_UNISTD_H=1', '-DHAVE_TR1_UNORDERED_MAP=1', '-DHAVE_TR1_UNORDERED_SET=1', '../test.cpp', '-c', '-o', 'test.cpp.1.o']

not found from /usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1: The

configuration failed

Checking for header unordered_set ==>

include

int main() { return 0; }

<== [1/2] cxx: build/default/.conf_check_ba6a401bf7e478bd338547b36ee642dd/test.cpp -> build/default/.conf_check_ba6a401bf7e478bd338547b36ee642dd/testbuild/test.cpp.1.o  ['g++-4.4', '-fPIC', '-DLINUX=1', '-DDLLHOOK=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '-DHAVE_STDIO_H=1', '-DHAVE_ASSERT_H=1', '-DHAVE_SYS_TIME_H=1', '-DHAVE_SYS_TYPES_H=1', '-DHAVE_SYS_STAT_H=1', '-DHAVE_STDLIB_H=1', '-DHAVE_STRING_H=1', '-DHAVE_MEMORY_H=1', '-DHAVE_STRINGS_H=1', '-DHAVE_INTTYPES_H=1', '-DHAVE_STDINT_H=1', '-DHAVE_UNISTD_H=1', '-DHAVE_TR1_UNORDERED_MAP=1', '-DHAVE_TR1_UNORDERED_SET=1', '../test.cpp', '-c', '-o', 'test.cpp.1.o'] err: In file included from /usr/include/c++/4.4/unordered_set:35, from ../test.cpp:1: /usr/include/c++/4.4/c++0x_warning.h:31:2: error: #error This file requires compiler and library support for the upcoming ISO C++ standard, C++0x. This support is currently experimental, and must be enabled with the -std=c++0x or -std=gnu++0x compiler options.

from /usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1: Test does not build: Traceback (most recent call last): File "/usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/.waf-1.6.11-30618c54883417962c38f5d395f83584/waflib/Tools/c_config.py", line 445, in run_c_code bld.compile() File "/usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/.waf-1.6.11-30618c54883417962c38f5d395f83584/waflib/Build.py", line 190, in compile raise Errors.BuildError(self.producer.error) BuildError: Build failed -> task in 'testprog' failed (exit status 1): {task 29717520: cxx test.cpp -> test.cpp.1.o} ['g++-4.4', '-fPIC', '-DLINUX=1', '-DDLLHOOK=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '-DHAVE_STDIO_H=1', '-DHAVE_ASSERT_H=1', '-DHAVE_SYS_TIME_H=1', '-DHAVE_SYS_TYPES_H=1', '-DHAVE_SYS_STAT_H=1', '-DHAVE_STDLIB_H=1', '-DHAVE_STRING_H=1', '-DHAVE_MEMORY_H=1', '-DHAVE_STRINGS_H=1', '-DHAVE_INTTYPES_H=1', '-DHAVE_STDINT_H=1', '-DHAVE_UNISTD_H=1', '-DHAVE_TR1_UNORDERED_MAP=1', '-DHAVE_TR1_UNORDERED_SET=1', '../test.cpp', '-c', '-o', 'test.cpp.1.o']

not found from /usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1: The

configuration failed

Checking for header limits ==>

include

int main() { return 0; }

<== [1/2] cxx: build/default/.conf_check_592f21463bb18e540bc1740ba3eb373f/test.cpp -> build/default/.conf_check_592f21463bb18e540bc1740ba3eb373f/testbuild/test.cpp.1.o  ['g++-4.4', '-fPIC', '-DLINUX=1', '-DDLLHOOK=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '-DHAVE_STDIO_H=1', '-DHAVE_ASSERT_H=1', '-DHAVE_SYS_TIME_H=1', '-DHAVE_SYS_TYPES_H=1', '-DHAVE_SYS_STAT_H=1', '-DHAVE_STDLIB_H=1', '-DHAVE_STRING_H=1', '-DHAVE_MEMORY_H=1', '-DHAVE_STRINGS_H=1', '-DHAVE_INTTYPES_H=1', '-DHAVE_STDINT_H=1', '-DHAVE_UNISTD_H=1', '-DHAVE_TR1_UNORDERED_MAP=1', '-DHAVE_TR1_UNORDERED_SET=1', '../test.cpp', '-c', '-o', 'test.cpp.1.o'] [2/2] cxxprogram: build/default/.conf_check_592f21463bb18e540bc1740ba3eb373f/testbuild/test.cpp.1.o -> build/default/.conf_check_592f21463bb18e540bc1740ba3eb373f/testbuild/testprog  ['g++-4.4', '-ldl', '-Wl,--export-dynamic', 'test.cpp.1.o', '-o', '/usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/build/default/.conf_check_592f21463bb18e540bc1740ba3eb373f/testbuild/testprog', '-Wl,-Bstatic', '-Wl,-Bdynamic']

yes

Checking for c++ namespaces ==>

namespace Outer { namespace Inner { int i = 0; }} int main () { using namespace Outer::Inner; return i; ; return 0; } <== [1/2] cxx: build/default/.conf_check_cee87f1f8db6c332106ef0215c5e6804/test.cpp -> build/default/.conf_check_cee87f1f8db6c332106ef0215c5e6804/testbuild/test.cpp.1.o  ['g++-4.4', '-fPIC', '-DLINUX=1', '-DDLLHOOK=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '-DHAVE_STDIO_H=1', '-DHAVE_ASSERT_H=1', '-DHAVE_SYS_TIME_H=1', '-DHAVE_SYS_TYPES_H=1', '-DHAVE_SYS_STAT_H=1', '-DHAVE_STDLIB_H=1', '-DHAVE_STRING_H=1', '-DHAVE_MEMORY_H=1', '-DHAVE_STRINGS_H=1', '-DHAVE_INTTYPES_H=1', '-DHAVE_STDINT_H=1', '-DHAVE_UNISTD_H=1', '-DHAVE_TR1_UNORDERED_MAP=1', '-DHAVE_TR1_UNORDERED_SET=1', '-DHAVE_STD_LIMITS=1', '../test.cpp', '-c', '-o', 'test.cpp.1.o'] [2/2] cxxprogram: build/default/.conf_check_cee87f1f8db6c332106ef0215c5e6804/testbuild/test.cpp.1.o -> build/default/.conf_check_cee87f1f8db6c332106ef0215c5e6804/testbuild/testprog  ['g++-4.4', '-ldl', '-Wl,--export-dynamic', 'test.cpp.1.o', '-o', '/usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/build/default/.conf_check_cee87f1f8db6c332106ef0215c5e6804/testbuild/testprog', '-Wl,-Bstatic', '-Wl,-Bdynamic']

yes

Checking for std::sstream ==>

include

ifdef HAVE_NAMESPACES

using namespace std;

endif

int main () { stringstream message; message << "Hello"; return 0; ; return 0; } <== [1/2] cxx: build/default/.conf_check_94b81a42cea0a7823af743889c7bb7c7/test.cpp -> build/default/.conf_check_94b81a42cea0a7823af743889c7bb7c7/testbuild/test.cpp.1.o  ['g++-4.4', '-fPIC', '-DLINUX=1', '-DDLLHOOK=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '-DHAVE_STDIO_H=1', '-DHAVE_ASSERT_H=1', '-DHAVE_SYS_TIME_H=1', '-DHAVE_SYS_TYPES_H=1', '-DHAVE_SYS_STAT_H=1', '-DHAVE_STDLIB_H=1', '-DHAVE_STRING_H=1', '-DHAVE_MEMORY_H=1', '-DHAVE_STRINGS_H=1', '-DHAVE_INTTYPES_H=1', '-DHAVE_STDINT_H=1', '-DHAVE_UNISTD_H=1', '-DHAVE_TR1_UNORDERED_MAP=1', '-DHAVE_TR1_UNORDERED_SET=1', '-DHAVE_STD_LIMITS=1', '-DHAVE_NAMESPACES=1', '../test.cpp', '-c', '-o', 'test.cpp.1.o'] [2/2] cxxprogram: build/default/.conf_check_94b81a42cea0a7823af743889c7bb7c7/testbuild/test.cpp.1.o -> build/default/.conf_check_94b81a42cea0a7823af743889c7bb7c7/testbuild/testprog  ['g++-4.4', '-ldl', '-Wl,--export-dynamic', 'test.cpp.1.o', '-o', '/usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/build/default/.conf_check_94b81a42cea0a7823af743889c7bb7c7/testbuild/testprog', '-Wl,-Bstatic', '-Wl,-Bdynamic']

yes

Checking for library m ==>

int main() { return 0; }

<== [1/2] c: build/default/.conf_check_442bca0929fcbd49036b01ec2feae7be/test.c -> build/default/.conf_check_442bca0929fcbd49036b01ec2feae7be/testbuild/test.c.1.o  ['gcc-4.4', '-fPIC', '-DLINUX=1', '-DDLLHOOK=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '-DHAVE_STDIO_H=1', '-DHAVE_ASSERT_H=1', '-DHAVE_SYS_TIME_H=1', '-DHAVE_SYS_TYPES_H=1', '-DHAVE_SYS_STAT_H=1', '-DHAVE_STDLIB_H=1', '-DHAVE_STRING_H=1', '-DHAVE_MEMORY_H=1', '-DHAVE_STRINGS_H=1', '-DHAVE_INTTYPES_H=1', '-DHAVE_STDINT_H=1', '-DHAVE_UNISTD_H=1', '-DHAVE_TR1_UNORDERED_MAP=1', '-DHAVE_TR1_UNORDERED_SET=1', '-DHAVE_STD_LIMITS=1', '-DHAVE_NAMESPACES=1', '-DHAVE_SSTREAM=1', '../test.c', '-c', '-o', 'test.c.1.o'] [2/2] cprogram: build/default/.conf_check_442bca0929fcbd49036b01ec2feae7be/testbuild/test.c.1.o -> build/default/.conf_check_442bca0929fcbd49036b01ec2feae7be/testbuild/testprog  ['gcc-4.4', '-ldl', '-Wl,--export-dynamic', 'test.c.1.o', '-o', '/usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/build/default/.conf_check_442bca0929fcbd49036b01ec2feae7be/testbuild/testprog', '-Wl,-Bstatic', '-Wl,-Bdynamic', '-lm'] yes [1/2] c: src/contrib/brkpnts/brkpnts.c -> build/default/.conf_check_7d0cf305e83bce110ed32552fa734500/testbuild/brkpnts.c.1.o  ['gcc-4.4', '-fPIC', '-O2', '-unroll', '-msse3', '-DLINUX=1', '-DDLLHOOK=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '-DHAVE_STDIO_H=1', '-DHAVE_ASSERT_H=1', '-DHAVE_SYS_TIME_H=1', '-DHAVE_SYS_TYPES_H=1', '-DHAVE_SYS_STAT_H=1', '-DHAVE_STDLIB_H=1', '-DHAVE_STRING_H=1', '-DHAVE_MEMORY_H=1', '-DHAVE_STRINGS_H=1', '-DHAVE_INTTYPES_H=1', '-DHAVE_STDINT_H=1', '-DHAVE_UNISTD_H=1', '-DHAVE_TR1_UNORDERED_MAP=1', '-DHAVE_TR1_UNORDERED_SET=1', '-DHAVE_STD_LIMITS=1', '-DHAVE_NAMESPACES=1', '-DHAVE_SSTREAM=1', '../../../../src/contrib/brkpnts/brkpnts.c', '-c', '-o', 'brkpnts.c.1.o'] [2/2] cprogram: build/default/.conf_check_7d0cf305e83bce110ed32552fa734500/testbuild/brkpnts.c.1.o -> build/default/.conf_check_7d0cf305e83bce110ed32552fa734500/testbuild/test_brkpnts  ['gcc-4.4', '-ldl', '-Wl,--export-dynamic', 'brkpnts.c.1.o', '-o', '/usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/build/default/.conf_check_7d0cf305e83bce110ed32552fa734500/testbuild/test_brkpnts', '-Wl,-Bstatic', '-Wl,-Bdynamic', '-lm'] /usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/build/default/.conf_check_7d0cf305e83bce110ed32552fa734500/testbuild/test_brkpnts err: Bernoulli and Aux function limit evaluation, (c) 1992 K. Kramer BP0_BERN: Asymptotic BP1_BERN: Secant BP2_BERN: Secant BP3_BERN: Asymptotic BP4_BERN: Asymptotic BP0_DBERN: Asymptotic BP2_DBERN: Secant BP3_DBERN: Secant BP5_DBERN: Asymptotic BP0_AUX1: Secant BP1_AUX1: Secant BP0_DAUX1: Secant BP1_DAUX1: Secant BP2_DAUX1: Asymptotic BP3_DAUX1: Asymptotic BP4_DAUX1: Asymptotic BP5_DAUX1: Asymptotic BP0_AUX2: Asymptotic BP1_AUX2: Asymptotic BP2_AUX2: Asymptotic BP0_DAUX2: Asymptotic Test completed, writing to output file.

---

Checking for header petscversion.h ==>

include

int main() { return 0; }

<== [1/2] cxx: build/default/.conf_check_079bcda4dd47152463882868a2cd1e14/test.cpp -> build/default/.conf_check_079bcda4dd47152463882868a2cd1e14/testbuild/test.cpp.1.o  ['g++-4.4', '-fPIC', '-I/usr/local/tools/petsc-3.1-p8/cogenda_shared-4.4/include', '-I/usr/include/mpich2', '-I/usr/local/tools/petsc-3.1-p8/include', '-DLINUX=1', '-DDLLHOOK=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '-DHAVE_STDIO_H=1', '-DHAVE_ASSERT_H=1', '-DHAVE_SYS_TIME_H=1', '-DHAVE_SYS_TYPES_H=1', '-DHAVE_SYS_STAT_H=1', '-DHAVE_STDLIB_H=1', '-DHAVE_STRING_H=1', '-DHAVE_MEMORY_H=1', '-DHAVE_STRINGS_H=1', '-DHAVE_INTTYPES_H=1', '-DHAVE_STDINT_H=1', '-DHAVE_UNISTD_H=1', '-DHAVE_TR1_UNORDERED_MAP=1', '-DHAVE_TR1_UNORDERED_SET=1', '-DHAVE_STD_LIMITS=1', '-DHAVE_NAMESPACES=1', '-DHAVE_SSTREAM=1', '../test.cpp', '-c', '-o', 'test.cpp.1.o'] [2/2] cxxprogram: build/default/.conf_check_079bcda4dd47152463882868a2cd1e14/testbuild/test.cpp.1.o -> build/default/.conf_check_079bcda4dd47152463882868a2cd1e14/testbuild/testprog  ['g++-4.4', '-ldl', '-Wl,--export-dynamic', 'test.cpp.1.o', '-o', '/usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/build/default/.conf_check_079bcda4dd47152463882868a2cd1e14/testbuild/testprog', '-Wl,-Bstatic', '-Wl,-Bdynamic']

yes

Checking for MPI

yes

Checking MPI library ['mpicc', '-cc=gcc', '-show'] out: gcc -cc=gcc

ok

Checking Fortran library ['g++-4.4', '-v', 'test.cc'] err: Using built-in specs. Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 4.4.6-14' --with-bugurl=file:///usr/share/doc/gcc-4.4/README.Bugs --enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.4 --enable-shared --enable-linker-build-id --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.4 --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-objc-gc --with-arch-32=i586 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 4.4.6 (Debian 4.4.6-14) COLLECT_GCC_OPTIONS='-v' '-shared-libgcc' '-mtune=generic' /usr/lib/gcc/x86_64-linux-gnu/4.4.6/cc1plus -quiet -v -imultilib . -imultiarch x86_64-linux-gnu -D_GNU_SOURCE test.cc -quiet -dumpbase test.cc -mtune=generic -auxbase test -version -o /tmp/ccLfxoMH.s ignoring nonexistent directory "/usr/local/include/x86_64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/4.4.6/../../../../x86_64-linux-gnu/include" ignoring duplicate directory "/usr/include/x86_64-linux-gnu" as it is a non-system directory that duplicates a system directory

include "..." search starts here:

include <...> search starts here:

/usr/include/c++/4.4 /usr/include/c++/4.4/x86_64-linux-gnu/. /usr/include/c++/4.4/backward /usr/local/include /usr/lib/gcc/x86_64-linux-gnu/4.4.6/include /usr/lib/gcc/x86_64-linux-gnu/4.4.6/include-fixed /usr/include/x86_64-linux-gnu /usr/include End of search list. GNU C++ (Debian 4.4.6-14) version 4.4.6 (x86_64-linux-gnu) compiled by GNU C version 4.4.6, GMP version 5.0.2, MPFR version 3.1.0-p3. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 Compiler executable checksum: f2ce8550c928a9f910ee9fe1b69ccff1 COLLECT_GCC_OPTIONS='-v' '-shared-libgcc' '-mtune=generic' as -V -Qy -o /tmp/ccVHjLOZ.o /tmp/ccLfxoMH.s GNU assembler version 2.22 (x86_64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.22 COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.4.6/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.4.6/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.4.6/:/usr/lib/gcc/x86_64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.4.6/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.4.6/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.4.6/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-v' '-shared-libgcc' '-mtune=generic' /usr/lib/gcc/x86_64-linux-gnu/4.4.6/collect2 --build-id --no-add-needed --eh-frame-hdr -m elf_x86_64 --hash-style=both -dynamic-linker /lib64/ld-linux-x86-64.so.2 /usr/lib/gcc/x86_64-linux-gnu/4.4.6/../../../x86_64-linux-gnu/crt1.o /usr/lib/gcc/x86_64-linux-gnu/4.4.6/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.4.6/crtbegin.o -L/usr/lib/gcc/x86_64-linux-gnu/4.4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.6/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.4.6/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.4.6/../../.. /tmp/ccVHjLOZ.o -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/4.4.6/crtend.o /usr/lib/gcc/x86_64-linux-gnu/4.4.6/../../../x86_64-linux-gnu/crtn.o

['gfortran-4.4', '-v', 'test.f90'] err: Driving: gfortran-4.4 -v test.f90 -lgfortranbegin -lgfortran -lm -shared-libgcc Using built-in specs. Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 4.4.6-14' --with-bugurl=file:///usr/share/doc/gcc-4.4/README.Bugs --enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.4 --enable-shared --enable-linker-build-id --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.4 --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-objc-gc --with-arch-32=i586 --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 4.4.6 (Debian 4.4.6-14) COLLECT_GCC_OPTIONS='-v' '-shared-libgcc' '-mtune=generic' /usr/lib/gcc/x86_64-linux-gnu/4.4.6/f951 test.f90 -quiet -dumpbase test.f90 -mtune=generic -auxbase test -version -fintrinsic-modules-path /usr/lib/gcc/x86_64-linux-gnu/4.4.6/finclude -o /tmp/cc9zDYdV.s GNU Fortran (Debian 4.4.6-14) version 4.4.6 (x86_64-linux-gnu) compiled by GNU C version 4.4.6, GMP version 5.0.2, MPFR version 3.1.0-p3. GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 COLLECT_GCC_OPTIONS='-v' '-shared-libgcc' '-mtune=generic' as -V -Qy -o /tmp/ccWD0Rbf.o /tmp/cc9zDYdV.s GNU assembler version 2.22 (x86_64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.22 COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.4.6/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.4.6/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.4.6/:/usr/lib/gcc/x86_64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/4.4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.4.6/:/usr/lib/gcc/x86_64-linux-gnu/4.4.6/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.4.6/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/4.4.6/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-v' '-shared-libgcc' '-mtune=generic' /usr/lib/gcc/x86_64-linux-gnu/4.4.6/collect2 --build-id --no-add-needed --eh-frame-hdr -m elf_x86_64 --hash-style=both -dynamic-linker /lib64/ld-linux-x86-64.so.2 /usr/lib/gcc/x86_64-linux-gnu/4.4.6/../../../x86_64-linux-gnu/crt1.o /usr/lib/gcc/x86_64-linux-gnu/4.4.6/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.4.6/crtbegin.o -L/usr/lib/gcc/x86_64-linux-gnu/4.4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.4.6/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.4.6/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.4.6/../../.. /tmp/ccWD0Rbf.o -lgfortranbegin -lgfortran -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/4.4.6/crtend.o /usr/lib/gcc/x86_64-linux-gnu/4.4.6/../../../x86_64-linux-gnu/crtn.o

ok

Checking for library Petsc ==>

int main() { return 0; }

<== [1/2] cxx: build/default/.conf_check_3da5788760743ea6096cf3c3475e8c0d/test.cpp -> build/default/.conf_check_3da5788760743ea6096cf3c3475e8c0d/testbuild/test.cpp.1.o  ['g++-4.4', '-fPIC', '-DLINUX=1', '-DDLLHOOK=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '-DHAVE_STDIO_H=1', '-DHAVE_ASSERT_H=1', '-DHAVE_SYS_TIME_H=1', '-DHAVE_SYS_TYPES_H=1', '-DHAVE_SYS_STAT_H=1', '-DHAVE_STDLIB_H=1', '-DHAVE_STRING_H=1', '-DHAVE_MEMORY_H=1', '-DHAVE_STRINGS_H=1', '-DHAVE_INTTYPES_H=1', '-DHAVE_STDINT_H=1', '-DHAVE_UNISTD_H=1', '-DHAVE_TR1_UNORDERED_MAP=1', '-DHAVE_TR1_UNORDERED_SET=1', '-DHAVE_STD_LIMITS=1', '-DHAVE_NAMESPACES=1', '-DHAVE_SSTREAM=1', '-DHAVE_PETSC=1', '-DHAVE_MPI=1', '../test.cpp', '-c', '-o', 'test.cpp.1.o'] [2/2] cxxprogram: build/default/.conf_check_3da5788760743ea6096cf3c3475e8c0d/testbuild/test.cpp.1.o -> build/default/.conf_check_3da5788760743ea6096cf3c3475e8c0d/testbuild/testprog  ['g++-4.4', '-ldl', '-Wl,--export-dynamic', '-lpetsc', '-lX11', '-L/usr/local/tools/petsc-3.1-p8/cogenda_shared-4.4/lib', '-lcmumps', '-ldmumps', '-lsmumps', '-lzmumps', '-lmumps_common', '-lpord', '-lsuperlu_dist_2.4', '-lparmetis', '-lmetis', '-lsuperlu_4.0', '-lscalapack', '-lblacs', '-lumfpack', '-lamd', '-lflapack', '-lfblas', '-lm', '-lgfortranbegin', '-lgfortran', '-Wl,-Bdynamic', 'test.cpp.1.o', '-o', '/usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/build/default/.conf_check_3da5788760743ea6096cf3c3475e8c0d/testbuild/testprog', '-Wl,-Bstatic', '-Wl,-Bdynamic'] err: test.cpp.1.o: In function main': test.cpp:(.text+0x0): multiple definition ofmain' /usr/lib/gcc/x86_64-linux-gnu/4.4.6/libgfortranbegin.a(fmain.o):(.text+0x0): first defined here /usr/lib/gcc/x86_64-linux-gnu/4.4.6/libgfortranbegin.a(fmain.o): In function main': (.text+0x26): undefined reference toMAIN__' collect2: ld returned 1 exit status

from /usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1: Test does not build: Traceback (most recent call last): File "/usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/.waf-1.6.11-30618c54883417962c38f5d395f83584/waflib/Tools/c_config.py", line 445, in run_c_code bld.compile() File "/usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/.waf-1.6.11-30618c54883417962c38f5d395f83584/waflib/Build.py", line 190, in compile raise Errors.BuildError(self.producer.error) BuildError: Build failed -> task in 'testprog' failed (exit status 1): {task 29815440: cxxprogram test.cpp.1.o -> testprog} ['g++-4.4', '-ldl', '-Wl,--export-dynamic', '-lpetsc', '-lX11', '-L/usr/local/tools/petsc-3.1-p8/cogenda_shared-4.4/lib', '-lcmumps', '-ldmumps', '-lsmumps', '-lzmumps', '-lmumps_common', '-lpord', '-lsuperlu_dist_2.4', '-lparmetis', '-lmetis', '-lsuperlu_4.0', '-lscalapack', '-lblacs', '-lumfpack', '-lamd', '-lflapack', '-lfblas', '-lm', '-lgfortranbegin', '-lgfortran', '-Wl,-Bdynamic', 'test.cpp.1.o', '-o', '/usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/build/default/.conf_check_3da5788760743ea6096cf3c3475e8c0d/testbuild/testprog', '-Wl,-Bstatic', '-Wl,-Bdynamic']

no from /usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1: The configuration failed

On 2/19/12, Shen Chen reply@reply.github.com wrote:

Hi,

Could you send me the complete config.log file? We tested it with GCC4.3/RHEL5, wondering how gcc4.4.6 differs...

regards, shenchen

On Mon, Feb 20, 2012 at 12:22 AM, arvindajoy < reply@reply.github.com

wrote:

Thank you for the new release. I am unable to compile this release though.

The configure step complains that

Checking for library Petsc : no The configuration failed (complete log in /usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/build/default/config.log)

The corresponding log shows that

Checking for library Petsc err: test.cpp.1.o: In function main': test.cpp:(.text+0x0): multiple definition ofmain' /usr/lib/gcc/x86_64-linux-gnu/4.4.6/libgfortranbegin.a(fmain.o):(.text+0x0): first defined here /usr/lib/gcc/x86_64-linux-gnu/4.4.6/libgfortranbegin.a(fmain.o): In function main': (.text+0x26): undefined reference toMAIN__' collect2: ld returned 1 exit status

I have used the same steps that worked for the earlier version of Genius.

I would pleased to have your ideas on what may be wrong.

Regards

Arvind

---

Reply to this email directly or view it on GitHub: https://github.com/cogenda/Genius-TCAD-Open/issues/8#issuecomment-4043012

---

Reply to this email directly or view it on GitHub: https://github.com/cogenda/Genius-TCAD-Open/issues/8#issuecomment-4043600

[Shallouf]

Hi everybody!! I am interested in starting using genius tcad under Linux and I don't know how to start because I don't know the commands and their syntax. Also, the documentation does not mention it. Could you help me please?

[arvindajoy]

Look through the examples. I find them extremely useful.

[cogenda]

Hi, arvindajoy, I can't see the config.log attachment. Is it really there?

[cogenda]

Hi, Shallouf, you may download the manual of the commercial version at http://www.cogenda.com/article/download The commands are the same, except for the missing 3D/parallel features.

[Shallouf]

Thanks a lot

[arvindajoy]

Hi

I had pasted the complete contents of config.log as part of my earlier email. I am able to see the contents by clicking on "show quoted text".

Regards Arvind

[cogenda]

Hi Arvindajoy,

Sorry for the late reply. We don't have gcc-4.4 for testing, and can only guess what has happened. You are using waf-1.6.11, instead of the waf shipped within Genius-Open (modified version of waf-1.6.4). The link command seems have changed in the new version of waf. It moved .o files after -l options, reversing the precedence of objects of conflicting names.

To avoid the conflict all together, I wrote a patch (below). Could you try and let me know if it works for you? Thanks.

*** /home/hash/build/genius/wscript     2012-02-28 21:22:23.000000000 +0800
--- wscript     2012-03-04 17:50:26.000000000 +0800
***************
*** 605,610 ****
--- 605,611 ----
             f.endswith('.a') or \
             f.endswith('.lib'):
            if f in cxx_flags: continue
+           if f=='-lgfortranbegin': continue

      if platform=='Linux' and f=='-lifcore':
        # ICC 11.1 mistakenly uses libifcore.a instead of libifcore_pic.a

[arvindajoy]

Hi

Thank you for your input. I am able to configure the system successfully now. However, when I try to build, I get the following error

[ 7/536] flex: src/parser/pattern.l -> build/default/src/parser/pattern.yy.c [ 8/536] bison: src/parser/pattern.y -> build/default/src/parser/pattern.tab.c build/default/src/parser/pattern.tab.h [ 9/536] sip: src/sip/genius.sip [ 10/552] cxx: build/default/src/sip/sipgeniuscmodule.cpp -> build/default/src/sip/sipgeniuscmodule.cpp.4.o [ 11/552] cxx: build/default/src/sip/sipgeniusSolverControl.cpp -> build/default/src/sip/sipgeniusSolverControl.cpp.4.o In file included from /usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/include/solver/solver_specify.h:37, from /usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/include/solution/external_circuit.h:31, from /usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/include/bc/boundary_condition.h:37, from /usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/src/sip/simulation_system.sip:53, from src/sip/sipgeniuscmodule.cpp:7: /usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/include/parser/parser_parameter.h: In member function ‘std::string Parser::Parameter::Value::type() const’: /usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/include/parser/parser_parameter.h:312: error: must #include before using typeid In file included from /usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/include/solver/solver_specify.h:37, from /usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/include/solution/external_circuit.h:31, from /usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/include/bc/boundary_condition.h:37, from /usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/src/sip/simulation_system.sip:53, from src/sip/sipgeniusSolverControl.cpp:7: /usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/include/parser/parser_parameter.h: In member function ‘std::string Parser::Parameter::Value::type() const’: /usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/include/parser/parser_parameter.h:312: error: must #include before using typeid Waf: Leaving directory `/usr/local/tools/cogenda-Genius-TCAD-Open-20110405-1/build/default' Build failed -> task in 'genius.so' failed (exit status 1): {task 41522896: cxx sipgeniuscmodule.cpp -> sipgeniuscmodule.cpp.4.o}

Regards Arvind

[cogenda]

Your version of GCC (4.4 I guess) is more strict than the version we are using (4.3). As the error message suggested, please add

#include <typeinfo>

at around line 25 of /include/parser/parser_parameter.h Thanks for the report! We will fix this for better compiler compatibility.

[drmars]

Hi all, I have a similar problem compiling Genius TCAD: My system is Mac OS X 10.6 (Snow Leopard). Flex (2.5.4), Bison (2.0), cgnslib (2.5) and VTK (5.4.2) have been successfully installed.

The following commands have been used to try to compile the Genius TCAD Open:

Defining the compiler version 4.2.1 (I had the same problems using gcc-compiler version 4.4):

export FC=/usr/bin/gfortran-4.2
export CXX=/usr/bin/g++-4.2
export CC=/usr/bin/gcc-4.2

Configuration of PETSc 3.1 followed the instructions given in the installation manual:

./configure PETSC_ARCH=with-mpi-gcc-4.2_instructed --with-cc=/usr/bin/gcc-4.2 --with-cxx=/usr/bin/g++-4.2 --with-fc=/usr/bin/gfortran-4.2 --download-mpich=1 --with-debugging=0 --with-shared=0 --with-x=0 --with-pic=1 --download-f-blas-lapack=1 --download-superlu=1 --download-superlu_dist=1 --download-blacs=1 --download-scalapack=1  --download-parmetis=1 --download-mumps=1 --COPTFLAGS="-O2" --CXXOPTFLAGS="-O2" --FOPTFLAGS="-O2"

make-command worked fine.

Configuration of Genius TCAD:

 ./waf --prefix=/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open --with-petsc-dir=/Users/zipp/Eigen-Compiles/GeniusTCAD/petsc-3.1-p8_2 --with-petsc-arch=with-mpi-gcc-4.2_instructed configure build install

fails at Checking for library Petsc.

In line 799 of config.log: build fails due to unknown "-Bdynamic" option of the ld command. Unfortunately, I have no idea what this means exactly and what I should do to overcome this problem... I would highly appreciate some help on this issue.

Best regards, docmars

The config.log is appended here:

# project genius configured on Sat Jun 30 14:29:07 2012 by
# waf 1.6.11 (abi 98, python 20701f0 on darwin)
# using ./waf --prefix=/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open --with-petsc-dir=/Users/zipp/Eigen-Compiles/GeniusTCAD/petsc-3.1-p8_2 --with-petsc-arch=with-mpi-gcc-4.2_instructed configure build install
#
----------------------------------------
Setting top to
/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open
----------------------------------------
Setting out to
/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open/build/default
----------------------------------------
Checking for 'icc' (c compiler)
find program=['icc'] paths=['/Users/zipp/Desktop/gss-0.46-p11/bin', '/Library/Frameworks/Python.framework/Versions/2.7/bin', '/opt/local/bin', '/opt/local/sbin', '/opt/local/bin', '/opt/local/sbin', '/Library/Frameworks/Python.framework/Versions/2.7/bin', '/usr/bin', '/bin', '/usr/sbin', '/sbin', '/usr/local/bin', '/opt/X11/bin', '/usr/texbin', '/usr/X11/bin'] var='CC' -> ''
from /Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open: Could not find the program icc
not found
----------------------------------------
Checking for 'gcc' (c compiler)
find program=['gcc', 'cc'] paths=['/Users/zipp/Desktop/gss-0.46-p11/bin', '/Library/Frameworks/Python.framework/Versions/2.7/bin', '/opt/local/bin', '/opt/local/sbin', '/opt/local/bin', '/opt/local/sbin', '/Library/Frameworks/Python.framework/Versions/2.7/bin', '/usr/bin', '/bin', '/usr/sbin', '/sbin', '/usr/local/bin', '/opt/X11/bin', '/usr/texbin', '/usr/X11/bin'] var='CC' -> '/usr/bin/gcc'
find program=['ar'] paths=['/Users/zipp/Desktop/gss-0.46-p11/bin', '/Library/Frameworks/Python.framework/Versions/2.7/bin', '/opt/local/bin', '/opt/local/sbin', '/opt/local/bin', '/opt/local/sbin', '/Library/Frameworks/Python.framework/Versions/2.7/bin', '/usr/bin', '/bin', '/usr/sbin', '/sbin', '/usr/local/bin', '/opt/X11/bin', '/usr/texbin', '/usr/X11/bin'] var='AR' -> '/usr/bin/ar'
/usr/bin/gcc
----------------------------------------
Checking for 'icpc' (c++ compiler)
find program=['icpc'] paths=['/Users/zipp/Desktop/gss-0.46-p11/bin', '/Library/Frameworks/Python.framework/Versions/2.7/bin', '/opt/local/bin', '/opt/local/sbin', '/opt/local/bin', '/opt/local/sbin', '/Library/Frameworks/Python.framework/Versions/2.7/bin', '/usr/bin', '/bin', '/usr/sbin', '/sbin', '/usr/local/bin', '/opt/X11/bin', '/usr/texbin', '/usr/X11/bin'] var='CXX' -> ''
from /Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open: Could not find the program icpc
not found
----------------------------------------
Checking for 'g++' (c++ compiler)
find program=['g++', 'c++'] paths=['/Users/zipp/Desktop/gss-0.46-p11/bin', '/Library/Frameworks/Python.framework/Versions/2.7/bin', '/opt/local/bin', '/opt/local/sbin', '/opt/local/bin', '/opt/local/sbin', '/Library/Frameworks/Python.framework/Versions/2.7/bin', '/usr/bin', '/bin', '/usr/sbin', '/sbin', '/usr/local/bin', '/opt/X11/bin', '/usr/texbin', '/usr/X11/bin'] var='CXX' -> '/usr/bin/g++'
(tool ar is already loaded, skipping)
/usr/bin/g++
----------------------------------------
Checking for 'ifort' (fortran compiler)
find program=['ifort'] paths=['/Users/zipp/Desktop/gss-0.46-p11/bin', '/Library/Frameworks/Python.framework/Versions/2.7/bin', '/opt/local/bin', '/opt/local/sbin', '/opt/local/bin', '/opt/local/sbin', '/Library/Frameworks/Python.framework/Versions/2.7/bin', '/usr/bin', '/bin', '/usr/sbin', '/sbin', '/usr/local/bin', '/opt/X11/bin', '/usr/texbin', '/usr/X11/bin'] var='FC' -> ''
from /Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open: Could not find the program ifort
not found
------------------------------------------
Checking for 'gfortran' (fortran compiler)
find program=['gfortran', 'g77'] paths=['/Users/zipp/Desktop/gss-0.46-p11/bin', '/Library/Frameworks/Python.framework/Versions/2.7/bin', '/opt/local/bin', '/opt/local/sbin', '/opt/local/bin', '/opt/local/sbin', '/Library/Frameworks/Python.framework/Versions/2.7/bin', '/usr/bin', '/bin', '/usr/sbin', '/sbin', '/usr/local/bin', '/opt/X11/bin', '/usr/texbin', '/usr/X11/bin'] var='FC' -> '/usr/bin/gfortran'
(tool ar is already loaded, skipping)
/usr/bin/gfortran
------------------------------------------
Checking for program git
not found
find program=['git'] paths=['/Users/zipp/Desktop/gss-0.46-p11/bin', '/Library/Frameworks/Python.framework/Versions/2.7/bin', '/opt/local/bin', '/opt/local/sbin', '/opt/local/bin', '/opt/local/sbin', '/Library/Frameworks/Python.framework/Versions/2.7/bin', '/usr/bin', '/bin', '/usr/sbin', '/sbin', '/usr/local/bin', '/opt/X11/bin', '/usr/texbin', '/usr/X11/bin'] var='GIT' -> ''
from /Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open: Could not find the program git
------------------------------------------
Setting version string
20120630
------------------------------------------
Checking for size of double
==>

#include <stdio.h>
int main()
{
    printf("%d", (int)sizeof(double));
    return 0;
}
<==
[1/3] c: build/default/.conf_check_365e155d4d9dee8cef66d6b8c3484fa5/test.c -> build/default/.conf_check_365e155d4d9dee8cef66d6b8c3484fa5/testbuild/test.c.1.o

['/usr/bin/gcc', '-DDARWIN=1', '../test.c', '-c', '-o', 'test.c.1.o']
[2/3] cprogram: build/default/.conf_check_365e155d4d9dee8cef66d6b8c3484fa5/testbuild/test.c.1.o -> build/default/.conf_check_365e155d4d9dee8cef66d6b8c3484fa5/testbuild/testprog

['/usr/bin/gcc', 'test.c.1.o', '-o', '/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open/build/default/.conf_check_365e155d4d9dee8cef66d6b8c3484fa5/testbuild/testprog']
[3/3] test_exec: build/default/.conf_check_365e155d4d9dee8cef66d6b8c3484fa5/testbuild/testprog

['/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open/build/default/.conf_check_365e155d4d9dee8cef66d6b8c3484fa5/testbuild/testprog']
out: 8
yes
------------------------------------------
Checking for size of float
==>

#include <stdio.h>
int main()
{
    printf("%d", (int)sizeof(float));
    return 0;
}
<==
[1/3] c: build/default/.conf_check_16c445e947e841bce40876284f65e640/test.c -> build/default/.conf_check_16c445e947e841bce40876284f65e640/testbuild/test.c.1.o

['/usr/bin/gcc', '-DDARWIN=1', '-DSIZEOF_DOUBLE=8', '../test.c', '-c', '-o', 'test.c.1.o']
[2/3] cprogram: build/default/.conf_check_16c445e947e841bce40876284f65e640/testbuild/test.c.1.o -> build/default/.conf_check_16c445e947e841bce40876284f65e640/testbuild/testprog

['/usr/bin/gcc', 'test.c.1.o', '-o', '/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open/build/default/.conf_check_16c445e947e841bce40876284f65e640/testbuild/testprog']
[3/3] test_exec: build/default/.conf_check_16c445e947e841bce40876284f65e640/testbuild/testprog

['/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open/build/default/.conf_check_16c445e947e841bce40876284f65e640/testbuild/testprog']
out: 4
yes
------------------------------------------
Checking for size of int
==>

#include <stdio.h>
int main()
{
    printf("%d", (int)sizeof(int));
    return 0;
}
<==
[1/3] c: build/default/.conf_check_89976af126331009cb9f11976585ed60/test.c -> build/default/.conf_check_89976af126331009cb9f11976585ed60/testbuild/test.c.1.o

['/usr/bin/gcc', '-DDARWIN=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '../test.c', '-c', '-o', 'test.c.1.o']
[2/3] cprogram: build/default/.conf_check_89976af126331009cb9f11976585ed60/testbuild/test.c.1.o -> build/default/.conf_check_89976af126331009cb9f11976585ed60/testbuild/testprog

['/usr/bin/gcc', 'test.c.1.o', '-o', '/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open/build/default/.conf_check_89976af126331009cb9f11976585ed60/testbuild/testprog']
[3/3] test_exec: build/default/.conf_check_89976af126331009cb9f11976585ed60/testbuild/testprog

['/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open/build/default/.conf_check_89976af126331009cb9f11976585ed60/testbuild/testprog']
out: 4
yes
------------------------------------------
Checking for size of long int
==>

#include <stdio.h>
int main()
{
    printf("%d", (int)sizeof(long int));
    return 0;
}
<==
[1/3] c: build/default/.conf_check_f64e3b1906bf028c587b0221f5454912/test.c -> build/default/.conf_check_f64e3b1906bf028c587b0221f5454912/testbuild/test.c.1.o

['/usr/bin/gcc', '-DDARWIN=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '../test.c', '-c', '-o', 'test.c.1.o']
[2/3] cprogram: build/default/.conf_check_f64e3b1906bf028c587b0221f5454912/testbuild/test.c.1.o -> build/default/.conf_check_f64e3b1906bf028c587b0221f5454912/testbuild/testprog

['/usr/bin/gcc', 'test.c.1.o', '-o', '/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open/build/default/.conf_check_f64e3b1906bf028c587b0221f5454912/testbuild/testprog']
[3/3] test_exec: build/default/.conf_check_f64e3b1906bf028c587b0221f5454912/testbuild/testprog

['/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open/build/default/.conf_check_f64e3b1906bf028c587b0221f5454912/testbuild/testprog']
out: 8
yes
------------------------------------------
Checking for size of long long int
==>

#include <stdio.h>
int main()
{
    printf("%d", (int)sizeof(long long int));
    return 0;
}
<==
[1/3] c: build/default/.conf_check_1123a5420e665b9a8042281e69f1536e/test.c -> build/default/.conf_check_1123a5420e665b9a8042281e69f1536e/testbuild/test.c.1.o

['/usr/bin/gcc', '-DDARWIN=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '../test.c', '-c', '-o', 'test.c.1.o']
[2/3] cprogram: build/default/.conf_check_1123a5420e665b9a8042281e69f1536e/testbuild/test.c.1.o -> build/default/.conf_check_1123a5420e665b9a8042281e69f1536e/testbuild/testprog

['/usr/bin/gcc', 'test.c.1.o', '-o', '/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open/build/default/.conf_check_1123a5420e665b9a8042281e69f1536e/testbuild/testprog']
[3/3] test_exec: build/default/.conf_check_1123a5420e665b9a8042281e69f1536e/testbuild/testprog

['/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open/build/default/.conf_check_1123a5420e665b9a8042281e69f1536e/testbuild/testprog']
out: 8
yes
------------------------------------------
Checking for size of short int
==>

#include <stdio.h>
int main()
{
    printf("%d", (int)sizeof(short int));
    return 0;
}
<==
[1/3] c: build/default/.conf_check_46e78608be599b765d3f68d6330b4865/test.c -> build/default/.conf_check_46e78608be599b765d3f68d6330b4865/testbuild/test.c.1.o

['/usr/bin/gcc', '-DDARWIN=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '../test.c', '-c', '-o', 'test.c.1.o']
[2/3] cprogram: build/default/.conf_check_46e78608be599b765d3f68d6330b4865/testbuild/test.c.1.o -> build/default/.conf_check_46e78608be599b765d3f68d6330b4865/testbuild/testprog

['/usr/bin/gcc', 'test.c.1.o', '-o', '/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open/build/default/.conf_check_46e78608be599b765d3f68d6330b4865/testbuild/testprog']
[3/3] test_exec: build/default/.conf_check_46e78608be599b765d3f68d6330b4865/testbuild/testprog

['/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open/build/default/.conf_check_46e78608be599b765d3f68d6330b4865/testbuild/testprog']
out: 2
yes
------------------------------------------
Checking for size of void *
==>

#include <stdio.h>
int main()
{
    printf("%d", (int)sizeof(void *));
    return 0;
}
<==
[1/3] c: build/default/.conf_check_15f81e4a096bafdd7c37a85965ef9080/test.c -> build/default/.conf_check_15f81e4a096bafdd7c37a85965ef9080/testbuild/test.c.1.o

['/usr/bin/gcc', '-DDARWIN=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '../test.c', '-c', '-o', 'test.c.1.o']
[2/3] cprogram: build/default/.conf_check_15f81e4a096bafdd7c37a85965ef9080/testbuild/test.c.1.o -> build/default/.conf_check_15f81e4a096bafdd7c37a85965ef9080/testbuild/testprog

['/usr/bin/gcc', 'test.c.1.o', '-o', '/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open/build/default/.conf_check_15f81e4a096bafdd7c37a85965ef9080/testbuild/testprog']
[3/3] test_exec: build/default/.conf_check_15f81e4a096bafdd7c37a85965ef9080/testbuild/testprog

['/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open/build/default/.conf_check_15f81e4a096bafdd7c37a85965ef9080/testbuild/testprog']
out: 8
yes
------------------------------------------
Checking for header fcntl.h
==>
#include <fcntl.h>

int main() {
    return 0;
}

<==
[1/2] c: build/default/.conf_check_f92571f0c57ba826932f09528ff69c29/test.c -> build/default/.conf_check_f92571f0c57ba826932f09528ff69c29/testbuild/test.c.1.o

['/usr/bin/gcc', '-DDARWIN=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '../test.c', '-c', '-o', 'test.c.1.o']
[2/2] cprogram: build/default/.conf_check_f92571f0c57ba826932f09528ff69c29/testbuild/test.c.1.o -> build/default/.conf_check_f92571f0c57ba826932f09528ff69c29/testbuild/testprog

['/usr/bin/gcc', 'test.c.1.o', '-o', '/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open/build/default/.conf_check_f92571f0c57ba826932f09528ff69c29/testbuild/testprog']
yes
------------------------------------------
Checking for header float.h
==>
#include <float.h>

int main() {
    return 0;
}

<==
[1/2] c: build/default/.conf_check_d147df756601925e1a8914768171abb6/test.c -> build/default/.conf_check_d147df756601925e1a8914768171abb6/testbuild/test.c.1.o

['/usr/bin/gcc', '-DDARWIN=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '../test.c', '-c', '-o', 'test.c.1.o']
[2/2] cprogram: build/default/.conf_check_d147df756601925e1a8914768171abb6/testbuild/test.c.1.o -> build/default/.conf_check_d147df756601925e1a8914768171abb6/testbuild/testprog

['/usr/bin/gcc', 'test.c.1.o', '-o', '/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open/build/default/.conf_check_d147df756601925e1a8914768171abb6/testbuild/testprog']
yes
------------------------------------------
Checking for header fenv.h
==>
#include <fenv.h>

int main() {
    return 0;
}

<==
[1/2] c: build/default/.conf_check_6047d6384c9baeb7a15c177b1c393d87/test.c -> build/default/.conf_check_6047d6384c9baeb7a15c177b1c393d87/testbuild/test.c.1.o

['/usr/bin/gcc', '-DDARWIN=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '../test.c', '-c', '-o', 'test.c.1.o']
[2/2] cprogram: build/default/.conf_check_6047d6384c9baeb7a15c177b1c393d87/testbuild/test.c.1.o -> build/default/.conf_check_6047d6384c9baeb7a15c177b1c393d87/testbuild/testprog

['/usr/bin/gcc', 'test.c.1.o', '-o', '/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open/build/default/.conf_check_6047d6384c9baeb7a15c177b1c393d87/testbuild/testprog']
yes
------------------------------------------
Checking for header limits.h
==>
#include <limits.h>

int main() {
    return 0;
}

<==
[1/2] c: build/default/.conf_check_e76f8508d51ba0ee2c91898f11317e65/test.c -> build/default/.conf_check_e76f8508d51ba0ee2c91898f11317e65/testbuild/test.c.1.o

['/usr/bin/gcc', '-DDARWIN=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '../test.c', '-c', '-o', 'test.c.1.o']
[2/2] cprogram: build/default/.conf_check_e76f8508d51ba0ee2c91898f11317e65/testbuild/test.c.1.o -> build/default/.conf_check_e76f8508d51ba0ee2c91898f11317e65/testbuild/testprog

['/usr/bin/gcc', 'test.c.1.o', '-o', '/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open/build/default/.conf_check_e76f8508d51ba0ee2c91898f11317e65/testbuild/testprog']
yes
------------------------------------------
Checking for header stddef.h
==>
#include <stddef.h>

int main() {
    return 0;
}

<==
[1/2] c: build/default/.conf_check_7d483127e49eed51ff00069e83bc9a8f/test.c -> build/default/.conf_check_7d483127e49eed51ff00069e83bc9a8f/testbuild/test.c.1.o

['/usr/bin/gcc', '-DDARWIN=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '../test.c', '-c', '-o', 'test.c.1.o']
[2/2] cprogram: build/default/.conf_check_7d483127e49eed51ff00069e83bc9a8f/testbuild/test.c.1.o -> build/default/.conf_check_7d483127e49eed51ff00069e83bc9a8f/testbuild/testprog

['/usr/bin/gcc', 'test.c.1.o', '-o', '/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open/build/default/.conf_check_7d483127e49eed51ff00069e83bc9a8f/testbuild/testprog']
yes
------------------------------------------
Checking for header stdlib.h
==>
#include <stdlib.h>

int main() {
    return 0;
}

<==
[1/2] c: build/default/.conf_check_8ec9c6f3526d3d2a4653131d360987cb/test.c -> build/default/.conf_check_8ec9c6f3526d3d2a4653131d360987cb/testbuild/test.c.1.o

['/usr/bin/gcc', '-DDARWIN=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '../test.c', '-c', '-o', 'test.c.1.o']
[2/2] cprogram: build/default/.conf_check_8ec9c6f3526d3d2a4653131d360987cb/testbuild/test.c.1.o -> build/default/.conf_check_8ec9c6f3526d3d2a4653131d360987cb/testbuild/testprog

['/usr/bin/gcc', 'test.c.1.o', '-o', '/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open/build/default/.conf_check_8ec9c6f3526d3d2a4653131d360987cb/testbuild/testprog']
yes
------------------------------------------
Checking for header string.h
==>
#include <string.h>

int main() {
    return 0;
}

<==
[1/2] c: build/default/.conf_check_e97ca4d4cc8aaacfc19de383af4b493a/test.c -> build/default/.conf_check_e97ca4d4cc8aaacfc19de383af4b493a/testbuild/test.c.1.o

['/usr/bin/gcc', '-DDARWIN=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '-DHAVE_STDLIB_H=1', '../test.c', '-c', '-o', 'test.c.1.o']
[2/2] cprogram: build/default/.conf_check_e97ca4d4cc8aaacfc19de383af4b493a/testbuild/test.c.1.o -> build/default/.conf_check_e97ca4d4cc8aaacfc19de383af4b493a/testbuild/testprog

['/usr/bin/gcc', 'test.c.1.o', '-o', '/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open/build/default/.conf_check_e97ca4d4cc8aaacfc19de383af4b493a/testbuild/testprog']
yes
------------------------------------------
Checking for header stdio.h
==>
#include <stdio.h>

int main() {
    return 0;
}

<==
[1/2] c: build/default/.conf_check_095adbcb6fcbecc99eb8a27982d649e4/test.c -> build/default/.conf_check_095adbcb6fcbecc99eb8a27982d649e4/testbuild/test.c.1.o

['/usr/bin/gcc', '-DDARWIN=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '-DHAVE_STDLIB_H=1', '-DHAVE_STRING_H=1', '../test.c', '-c', '-o', 'test.c.1.o']
[2/2] cprogram: build/default/.conf_check_095adbcb6fcbecc99eb8a27982d649e4/testbuild/test.c.1.o -> build/default/.conf_check_095adbcb6fcbecc99eb8a27982d649e4/testbuild/testprog

['/usr/bin/gcc', 'test.c.1.o', '-o', '/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open/build/default/.conf_check_095adbcb6fcbecc99eb8a27982d649e4/testbuild/testprog']
yes
------------------------------------------
Checking for header assert.h
==>
#include <assert.h>

int main() {
    return 0;
}

<==
[1/2] c: build/default/.conf_check_5334ea13d34f3c2058f0659c47a21137/test.c -> build/default/.conf_check_5334ea13d34f3c2058f0659c47a21137/testbuild/test.c.1.o

['/usr/bin/gcc', '-DDARWIN=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '-DHAVE_STDLIB_H=1', '-DHAVE_STRING_H=1', '-DHAVE_STDIO_H=1', '../test.c', '-c', '-o', 'test.c.1.o']
[2/2] cprogram: build/default/.conf_check_5334ea13d34f3c2058f0659c47a21137/testbuild/test.c.1.o -> build/default/.conf_check_5334ea13d34f3c2058f0659c47a21137/testbuild/testprog

['/usr/bin/gcc', 'test.c.1.o', '-o', '/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open/build/default/.conf_check_5334ea13d34f3c2058f0659c47a21137/testbuild/testprog']
yes
------------------------------------------
Checking for header sys/time.h
==>
#include <sys/time.h>

int main() {
    return 0;
}

<==
[1/2] c: build/default/.conf_check_52d33f698d069ccf16ef6a484056653c/test.c -> build/default/.conf_check_52d33f698d069ccf16ef6a484056653c/testbuild/test.c.1.o

['/usr/bin/gcc', '-DDARWIN=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '-DHAVE_STDLIB_H=1', '-DHAVE_STRING_H=1', '-DHAVE_STDIO_H=1', '-DHAVE_ASSERT_H=1', '../test.c', '-c', '-o', 'test.c.1.o']
[2/2] cprogram: build/default/.conf_check_52d33f698d069ccf16ef6a484056653c/testbuild/test.c.1.o -> build/default/.conf_check_52d33f698d069ccf16ef6a484056653c/testbuild/testprog

['/usr/bin/gcc', 'test.c.1.o', '-o', '/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open/build/default/.conf_check_52d33f698d069ccf16ef6a484056653c/testbuild/testprog']
yes
------------------------------------------
Checking for header sys/types.h
==>
#include <sys/types.h>

int main() {
    return 0;
}

<==
[1/2] c: build/default/.conf_check_64d68a5ad8c89e20657cb3e94f3dae5d/test.c -> build/default/.conf_check_64d68a5ad8c89e20657cb3e94f3dae5d/testbuild/test.c.1.o

['/usr/bin/gcc', '-DDARWIN=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '-DHAVE_STDLIB_H=1', '-DHAVE_STRING_H=1', '-DHAVE_STDIO_H=1', '-DHAVE_ASSERT_H=1', '-DHAVE_SYS_TIME_H=1', '../test.c', '-c', '-o', 'test.c.1.o']
[2/2] cprogram: build/default/.conf_check_64d68a5ad8c89e20657cb3e94f3dae5d/testbuild/test.c.1.o -> build/default/.conf_check_64d68a5ad8c89e20657cb3e94f3dae5d/testbuild/testprog

['/usr/bin/gcc', 'test.c.1.o', '-o', '/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open/build/default/.conf_check_64d68a5ad8c89e20657cb3e94f3dae5d/testbuild/testprog']
yes
------------------------------------------
Checking for header sys/stat.h
==>
#include <sys/stat.h>

int main() {
    return 0;
}

<==
[1/2] c: build/default/.conf_check_989074c31bbc8d033d35b6062bda0770/test.c -> build/default/.conf_check_989074c31bbc8d033d35b6062bda0770/testbuild/test.c.1.o

['/usr/bin/gcc', '-DDARWIN=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '-DHAVE_STDLIB_H=1', '-DHAVE_STRING_H=1', '-DHAVE_STDIO_H=1', '-DHAVE_ASSERT_H=1', '-DHAVE_SYS_TIME_H=1', '-DHAVE_SYS_TYPES_H=1', '../test.c', '-c', '-o', 'test.c.1.o']
[2/2] cprogram: build/default/.conf_check_989074c31bbc8d033d35b6062bda0770/testbuild/test.c.1.o -> build/default/.conf_check_989074c31bbc8d033d35b6062bda0770/testbuild/testprog

['/usr/bin/gcc', 'test.c.1.o', '-o', '/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open/build/default/.conf_check_989074c31bbc8d033d35b6062bda0770/testbuild/testprog']
yes
------------------------------------------
Checking for header stdlib.h
==>
#include <stdlib.h>

int main() {
    return 0;
}

<==
[1/2] c: build/default/.conf_check_8ec9c6f3526d3d2a4653131d360987cb/test.c -> build/default/.conf_check_8ec9c6f3526d3d2a4653131d360987cb/testbuild/test.c.1.o

['/usr/bin/gcc', '-DDARWIN=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '-DHAVE_STRING_H=1', '-DHAVE_STDIO_H=1', '-DHAVE_ASSERT_H=1', '-DHAVE_SYS_TIME_H=1', '-DHAVE_SYS_TYPES_H=1', '-DHAVE_SYS_STAT_H=1', '../test.c', '-c', '-o', 'test.c.1.o']
[2/2] cprogram: build/default/.conf_check_8ec9c6f3526d3d2a4653131d360987cb/testbuild/test.c.1.o -> build/default/.conf_check_8ec9c6f3526d3d2a4653131d360987cb/testbuild/testprog

['/usr/bin/gcc', 'test.c.1.o', '-o', '/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open/build/default/.conf_check_8ec9c6f3526d3d2a4653131d360987cb/testbuild/testprog']
yes
------------------------------------------
Checking for header string.h
==>
#include <string.h>

int main() {
    return 0;
}

<==
[1/2] c: build/default/.conf_check_e97ca4d4cc8aaacfc19de383af4b493a/test.c -> build/default/.conf_check_e97ca4d4cc8aaacfc19de383af4b493a/testbuild/test.c.1.o

['/usr/bin/gcc', '-DDARWIN=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '-DHAVE_STDIO_H=1', '-DHAVE_ASSERT_H=1', '-DHAVE_SYS_TIME_H=1', '-DHAVE_SYS_TYPES_H=1', '-DHAVE_SYS_STAT_H=1', '-DHAVE_STDLIB_H=1', '../test.c', '-c', '-o', 'test.c.1.o']
[2/2] cprogram: build/default/.conf_check_e97ca4d4cc8aaacfc19de383af4b493a/testbuild/test.c.1.o -> build/default/.conf_check_e97ca4d4cc8aaacfc19de383af4b493a/testbuild/testprog

['/usr/bin/gcc', 'test.c.1.o', '-o', '/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open/build/default/.conf_check_e97ca4d4cc8aaacfc19de383af4b493a/testbuild/testprog']
yes
------------------------------------------
Checking for header memory.h
==>
#include <memory.h>

int main() {
    return 0;
}

<==
[1/2] c: build/default/.conf_check_e358da96f8e92bf51dbddc57dec34bad/test.c -> build/default/.conf_check_e358da96f8e92bf51dbddc57dec34bad/testbuild/test.c.1.o

['/usr/bin/gcc', '-DDARWIN=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '-DHAVE_STDIO_H=1', '-DHAVE_ASSERT_H=1', '-DHAVE_SYS_TIME_H=1', '-DHAVE_SYS_TYPES_H=1', '-DHAVE_SYS_STAT_H=1', '-DHAVE_STDLIB_H=1', '-DHAVE_STRING_H=1', '../test.c', '-c', '-o', 'test.c.1.o']
[2/2] cprogram: build/default/.conf_check_e358da96f8e92bf51dbddc57dec34bad/testbuild/test.c.1.o -> build/default/.conf_check_e358da96f8e92bf51dbddc57dec34bad/testbuild/testprog

['/usr/bin/gcc', 'test.c.1.o', '-o', '/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open/build/default/.conf_check_e358da96f8e92bf51dbddc57dec34bad/testbuild/testprog']
yes
------------------------------------------
Checking for header strings.h
==>
#include <strings.h>

int main() {
    return 0;
}

<==
[1/2] c: build/default/.conf_check_23900e189ef25f8769b6878c33ac669e/test.c -> build/default/.conf_check_23900e189ef25f8769b6878c33ac669e/testbuild/test.c.1.o

['/usr/bin/gcc', '-DDARWIN=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '-DHAVE_STDIO_H=1', '-DHAVE_ASSERT_H=1', '-DHAVE_SYS_TIME_H=1', '-DHAVE_SYS_TYPES_H=1', '-DHAVE_SYS_STAT_H=1', '-DHAVE_STDLIB_H=1', '-DHAVE_STRING_H=1', '-DHAVE_MEMORY_H=1', '../test.c', '-c', '-o', 'test.c.1.o']
[2/2] cprogram: build/default/.conf_check_23900e189ef25f8769b6878c33ac669e/testbuild/test.c.1.o -> build/default/.conf_check_23900e189ef25f8769b6878c33ac669e/testbuild/testprog

['/usr/bin/gcc', 'test.c.1.o', '-o', '/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open/build/default/.conf_check_23900e189ef25f8769b6878c33ac669e/testbuild/testprog']
yes
------------------------------------------
Checking for header inttypes.h
==>
#include <inttypes.h>

int main() {
    return 0;
}

<==
[1/2] c: build/default/.conf_check_7b3094287dc0e7dccba356f86f5ac28e/test.c -> build/default/.conf_check_7b3094287dc0e7dccba356f86f5ac28e/testbuild/test.c.1.o

['/usr/bin/gcc', '-DDARWIN=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '-DHAVE_STDIO_H=1', '-DHAVE_ASSERT_H=1', '-DHAVE_SYS_TIME_H=1', '-DHAVE_SYS_TYPES_H=1', '-DHAVE_SYS_STAT_H=1', '-DHAVE_STDLIB_H=1', '-DHAVE_STRING_H=1', '-DHAVE_MEMORY_H=1', '-DHAVE_STRINGS_H=1', '../test.c', '-c', '-o', 'test.c.1.o']
[2/2] cprogram: build/default/.conf_check_7b3094287dc0e7dccba356f86f5ac28e/testbuild/test.c.1.o -> build/default/.conf_check_7b3094287dc0e7dccba356f86f5ac28e/testbuild/testprog

['/usr/bin/gcc', 'test.c.1.o', '-o', '/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open/build/default/.conf_check_7b3094287dc0e7dccba356f86f5ac28e/testbuild/testprog']
yes
------------------------------------------
Checking for header stdint.h
==>
#include <stdint.h>

int main() {
    return 0;
}

<==
[1/2] c: build/default/.conf_check_a7fccd96869f90efd4922c9b9961b095/test.c -> build/default/.conf_check_a7fccd96869f90efd4922c9b9961b095/testbuild/test.c.1.o

['/usr/bin/gcc', '-DDARWIN=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '-DHAVE_STDIO_H=1', '-DHAVE_ASSERT_H=1', '-DHAVE_SYS_TIME_H=1', '-DHAVE_SYS_TYPES_H=1', '-DHAVE_SYS_STAT_H=1', '-DHAVE_STDLIB_H=1', '-DHAVE_STRING_H=1', '-DHAVE_MEMORY_H=1', '-DHAVE_STRINGS_H=1', '-DHAVE_INTTYPES_H=1', '../test.c', '-c', '-o', 'test.c.1.o']
[2/2] cprogram: build/default/.conf_check_a7fccd96869f90efd4922c9b9961b095/testbuild/test.c.1.o -> build/default/.conf_check_a7fccd96869f90efd4922c9b9961b095/testbuild/testprog

['/usr/bin/gcc', 'test.c.1.o', '-o', '/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open/build/default/.conf_check_a7fccd96869f90efd4922c9b9961b095/testbuild/testprog']
yes
------------------------------------------
Checking for header unistd.h
==>
#include <unistd.h>

int main() {
    return 0;
}

<==
[1/2] c: build/default/.conf_check_ae1135b278b21799f395354fef4a52b7/test.c -> build/default/.conf_check_ae1135b278b21799f395354fef4a52b7/testbuild/test.c.1.o

['/usr/bin/gcc', '-DDARWIN=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '-DHAVE_STDIO_H=1', '-DHAVE_ASSERT_H=1', '-DHAVE_SYS_TIME_H=1', '-DHAVE_SYS_TYPES_H=1', '-DHAVE_SYS_STAT_H=1', '-DHAVE_STDLIB_H=1', '-DHAVE_STRING_H=1', '-DHAVE_MEMORY_H=1', '-DHAVE_STRINGS_H=1', '-DHAVE_INTTYPES_H=1', '-DHAVE_STDINT_H=1', '../test.c', '-c', '-o', 'test.c.1.o']
[2/2] cprogram: build/default/.conf_check_ae1135b278b21799f395354fef4a52b7/testbuild/test.c.1.o -> build/default/.conf_check_ae1135b278b21799f395354fef4a52b7/testbuild/testprog

['/usr/bin/gcc', 'test.c.1.o', '-o', '/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open/build/default/.conf_check_ae1135b278b21799f395354fef4a52b7/testbuild/testprog']
yes
------------------------------------------
Checking for header tr1/unordered_map
==>
#include <tr1/unordered_map>

int main() {
    return 0;
}

<==
[1/2] cxx: build/default/.conf_check_892e38a76b54e3260fe356b3b37ebb31/test.cpp -> build/default/.conf_check_892e38a76b54e3260fe356b3b37ebb31/testbuild/test.cpp.1.o

['/usr/bin/g++', '-DDARWIN=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '-DHAVE_STDIO_H=1', '-DHAVE_ASSERT_H=1', '-DHAVE_SYS_TIME_H=1', '-DHAVE_SYS_TYPES_H=1', '-DHAVE_SYS_STAT_H=1', '-DHAVE_STDLIB_H=1', '-DHAVE_STRING_H=1', '-DHAVE_MEMORY_H=1', '-DHAVE_STRINGS_H=1', '-DHAVE_INTTYPES_H=1', '-DHAVE_STDINT_H=1', '-DHAVE_UNISTD_H=1', '../test.cpp', '-c', '-o', 'test.cpp.1.o']
[2/2] cxxprogram: build/default/.conf_check_892e38a76b54e3260fe356b3b37ebb31/testbuild/test.cpp.1.o -> build/default/.conf_check_892e38a76b54e3260fe356b3b37ebb31/testbuild/testprog

['/usr/bin/g++', 'test.cpp.1.o', '-o', '/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open/build/default/.conf_check_892e38a76b54e3260fe356b3b37ebb31/testbuild/testprog']
yes
------------------------------------------
Checking for header tr1/unordered_set
==>
#include <tr1/unordered_set>

int main() {
    return 0;
}

<==
[1/2] cxx: build/default/.conf_check_aadff3e9dec9e03f453f5141d542a08b/test.cpp -> build/default/.conf_check_aadff3e9dec9e03f453f5141d542a08b/testbuild/test.cpp.1.o

['/usr/bin/g++', '-DDARWIN=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '-DHAVE_STDIO_H=1', '-DHAVE_ASSERT_H=1', '-DHAVE_SYS_TIME_H=1', '-DHAVE_SYS_TYPES_H=1', '-DHAVE_SYS_STAT_H=1', '-DHAVE_STDLIB_H=1', '-DHAVE_STRING_H=1', '-DHAVE_MEMORY_H=1', '-DHAVE_STRINGS_H=1', '-DHAVE_INTTYPES_H=1', '-DHAVE_STDINT_H=1', '-DHAVE_UNISTD_H=1', '-DHAVE_TR1_UNORDERED_MAP=1', '../test.cpp', '-c', '-o', 'test.cpp.1.o']
[2/2] cxxprogram: build/default/.conf_check_aadff3e9dec9e03f453f5141d542a08b/testbuild/test.cpp.1.o -> build/default/.conf_check_aadff3e9dec9e03f453f5141d542a08b/testbuild/testprog

['/usr/bin/g++', 'test.cpp.1.o', '-o', '/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open/build/default/.conf_check_aadff3e9dec9e03f453f5141d542a08b/testbuild/testprog']
yes
------------------------------------------
Checking for header unordered_map
==>
#include <unordered_map>

int main() {
    return 0;
}

<==
[1/2] cxx: build/default/.conf_check_0256874189748743c3970fc48efcf945/test.cpp -> build/default/.conf_check_0256874189748743c3970fc48efcf945/testbuild/test.cpp.1.o

['/usr/bin/g++', '-DDARWIN=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '-DHAVE_STDIO_H=1', '-DHAVE_ASSERT_H=1', '-DHAVE_SYS_TIME_H=1', '-DHAVE_SYS_TYPES_H=1', '-DHAVE_SYS_STAT_H=1', '-DHAVE_STDLIB_H=1', '-DHAVE_STRING_H=1', '-DHAVE_MEMORY_H=1', '-DHAVE_STRINGS_H=1', '-DHAVE_INTTYPES_H=1', '-DHAVE_STDINT_H=1', '-DHAVE_UNISTD_H=1', '-DHAVE_TR1_UNORDERED_MAP=1', '-DHAVE_TR1_UNORDERED_SET=1', '../test.cpp', '-c', '-o', 'test.cpp.1.o']
err: ../test.cpp:1:25: error: unordered_map: No such file or directory

from /Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open: Test does not build: Traceback (most recent call last):
  File "/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open/.waf-1.6.11-0527ecccd74b489313f166a2f2ac76ed/waflib/Tools/c_config.py", line 445, in run_c_code
    bld.compile()
  File "/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open/.waf-1.6.11-0527ecccd74b489313f166a2f2ac76ed/waflib/Build.py", line 190, in compile
    raise Errors.BuildError(self.producer.error)
BuildError: Build failed
 -> task in 'testprog' failed (exit status 1): 
    {task 4314922768: cxx test.cpp -> test.cpp.1.o}
['/usr/bin/g++', '-DDARWIN=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '-DHAVE_STDIO_H=1', '-DHAVE_ASSERT_H=1', '-DHAVE_SYS_TIME_H=1', '-DHAVE_SYS_TYPES_H=1', '-DHAVE_SYS_STAT_H=1', '-DHAVE_STDLIB_H=1', '-DHAVE_STRING_H=1', '-DHAVE_MEMORY_H=1', '-DHAVE_STRINGS_H=1', '-DHAVE_INTTYPES_H=1', '-DHAVE_STDINT_H=1', '-DHAVE_UNISTD_H=1', '-DHAVE_TR1_UNORDERED_MAP=1', '-DHAVE_TR1_UNORDERED_SET=1', '../test.cpp', '-c', '-o', 'test.cpp.1.o']

not found
from /Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open: The configuration failed
------------------------------------------
Checking for header unordered_set
==>
#include <unordered_set>

int main() {
    return 0;
}

<==
[1/2] cxx: build/default/.conf_check_ba6a401bf7e478bd338547b36ee642dd/test.cpp -> build/default/.conf_check_ba6a401bf7e478bd338547b36ee642dd/testbuild/test.cpp.1.o

['/usr/bin/g++', '-DDARWIN=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '-DHAVE_STDIO_H=1', '-DHAVE_ASSERT_H=1', '-DHAVE_SYS_TIME_H=1', '-DHAVE_SYS_TYPES_H=1', '-DHAVE_SYS_STAT_H=1', '-DHAVE_STDLIB_H=1', '-DHAVE_STRING_H=1', '-DHAVE_MEMORY_H=1', '-DHAVE_STRINGS_H=1', '-DHAVE_INTTYPES_H=1', '-DHAVE_STDINT_H=1', '-DHAVE_UNISTD_H=1', '-DHAVE_TR1_UNORDERED_MAP=1', '-DHAVE_TR1_UNORDERED_SET=1', '../test.cpp', '-c', '-o', 'test.cpp.1.o']
err: ../test.cpp:1:25: error: unordered_set: No such file or directory

from /Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open: Test does not build: Traceback (most recent call last):
  File "/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open/.waf-1.6.11-0527ecccd74b489313f166a2f2ac76ed/waflib/Tools/c_config.py", line 445, in run_c_code
    bld.compile()
  File "/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open/.waf-1.6.11-0527ecccd74b489313f166a2f2ac76ed/waflib/Build.py", line 190, in compile
    raise Errors.BuildError(self.producer.error)
BuildError: Build failed
 -> task in 'testprog' failed (exit status 1): 
    {task 4314961168: cxx test.cpp -> test.cpp.1.o}
['/usr/bin/g++', '-DDARWIN=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '-DHAVE_STDIO_H=1', '-DHAVE_ASSERT_H=1', '-DHAVE_SYS_TIME_H=1', '-DHAVE_SYS_TYPES_H=1', '-DHAVE_SYS_STAT_H=1', '-DHAVE_STDLIB_H=1', '-DHAVE_STRING_H=1', '-DHAVE_MEMORY_H=1', '-DHAVE_STRINGS_H=1', '-DHAVE_INTTYPES_H=1', '-DHAVE_STDINT_H=1', '-DHAVE_UNISTD_H=1', '-DHAVE_TR1_UNORDERED_MAP=1', '-DHAVE_TR1_UNORDERED_SET=1', '../test.cpp', '-c', '-o', 'test.cpp.1.o']

not found
from /Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open: The configuration failed
------------------------------------------
Checking for header limits
==>
#include <limits>

int main() {
    return 0;
}

<==
[1/2] cxx: build/default/.conf_check_592f21463bb18e540bc1740ba3eb373f/test.cpp -> build/default/.conf_check_592f21463bb18e540bc1740ba3eb373f/testbuild/test.cpp.1.o

['/usr/bin/g++', '-DDARWIN=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '-DHAVE_STDIO_H=1', '-DHAVE_ASSERT_H=1', '-DHAVE_SYS_TIME_H=1', '-DHAVE_SYS_TYPES_H=1', '-DHAVE_SYS_STAT_H=1', '-DHAVE_STDLIB_H=1', '-DHAVE_STRING_H=1', '-DHAVE_MEMORY_H=1', '-DHAVE_STRINGS_H=1', '-DHAVE_INTTYPES_H=1', '-DHAVE_STDINT_H=1', '-DHAVE_UNISTD_H=1', '-DHAVE_TR1_UNORDERED_MAP=1', '-DHAVE_TR1_UNORDERED_SET=1', '../test.cpp', '-c', '-o', 'test.cpp.1.o']
[2/2] cxxprogram: build/default/.conf_check_592f21463bb18e540bc1740ba3eb373f/testbuild/test.cpp.1.o -> build/default/.conf_check_592f21463bb18e540bc1740ba3eb373f/testbuild/testprog

['/usr/bin/g++', 'test.cpp.1.o', '-o', '/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open/build/default/.conf_check_592f21463bb18e540bc1740ba3eb373f/testbuild/testprog']
yes
------------------------------------------
Checking for c++ namespaces
==>

namespace Outer { namespace Inner { int i = 0; }}
int
main ()
{
using namespace Outer::Inner; return i;
  ;
  return 0;
}
<==
[1/2] cxx: build/default/.conf_check_cee87f1f8db6c332106ef0215c5e6804/test.cpp -> build/default/.conf_check_cee87f1f8db6c332106ef0215c5e6804/testbuild/test.cpp.1.o

['/usr/bin/g++', '-DDARWIN=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '-DHAVE_STDIO_H=1', '-DHAVE_ASSERT_H=1', '-DHAVE_SYS_TIME_H=1', '-DHAVE_SYS_TYPES_H=1', '-DHAVE_SYS_STAT_H=1', '-DHAVE_STDLIB_H=1', '-DHAVE_STRING_H=1', '-DHAVE_MEMORY_H=1', '-DHAVE_STRINGS_H=1', '-DHAVE_INTTYPES_H=1', '-DHAVE_STDINT_H=1', '-DHAVE_UNISTD_H=1', '-DHAVE_TR1_UNORDERED_MAP=1', '-DHAVE_TR1_UNORDERED_SET=1', '-DHAVE_STD_LIMITS=1', '../test.cpp', '-c', '-o', 'test.cpp.1.o']
[2/2] cxxprogram: build/default/.conf_check_cee87f1f8db6c332106ef0215c5e6804/testbuild/test.cpp.1.o -> build/default/.conf_check_cee87f1f8db6c332106ef0215c5e6804/testbuild/testprog

['/usr/bin/g++', 'test.cpp.1.o', '-o', '/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open/build/default/.conf_check_cee87f1f8db6c332106ef0215c5e6804/testbuild/testprog']
yes
------------------------------------------
Checking for std::sstream
==>

#include <sstream>
#ifdef HAVE_NAMESPACES
using namespace std;
#endif
int
main ()
{
stringstream message; message << "Hello"; return 0;
  ;
  return 0;
}
<==
[1/2] cxx: build/default/.conf_check_94b81a42cea0a7823af743889c7bb7c7/test.cpp -> build/default/.conf_check_94b81a42cea0a7823af743889c7bb7c7/testbuild/test.cpp.1.o

['/usr/bin/g++', '-DDARWIN=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '-DHAVE_STDIO_H=1', '-DHAVE_ASSERT_H=1', '-DHAVE_SYS_TIME_H=1', '-DHAVE_SYS_TYPES_H=1', '-DHAVE_SYS_STAT_H=1', '-DHAVE_STDLIB_H=1', '-DHAVE_STRING_H=1', '-DHAVE_MEMORY_H=1', '-DHAVE_STRINGS_H=1', '-DHAVE_INTTYPES_H=1', '-DHAVE_STDINT_H=1', '-DHAVE_UNISTD_H=1', '-DHAVE_TR1_UNORDERED_MAP=1', '-DHAVE_TR1_UNORDERED_SET=1', '-DHAVE_STD_LIMITS=1', '-DHAVE_NAMESPACES=1', '../test.cpp', '-c', '-o', 'test.cpp.1.o']
[2/2] cxxprogram: build/default/.conf_check_94b81a42cea0a7823af743889c7bb7c7/testbuild/test.cpp.1.o -> build/default/.conf_check_94b81a42cea0a7823af743889c7bb7c7/testbuild/testprog

['/usr/bin/g++', 'test.cpp.1.o', '-o', '/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open/build/default/.conf_check_94b81a42cea0a7823af743889c7bb7c7/testbuild/testprog']
yes
------------------------------------------
Checking for library m
==>

int main() {
    return 0;
}

<==
[1/2] c: build/default/.conf_check_442bca0929fcbd49036b01ec2feae7be/test.c -> build/default/.conf_check_442bca0929fcbd49036b01ec2feae7be/testbuild/test.c.1.o

['/usr/bin/gcc', '-DDARWIN=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '-DHAVE_STDIO_H=1', '-DHAVE_ASSERT_H=1', '-DHAVE_SYS_TIME_H=1', '-DHAVE_SYS_TYPES_H=1', '-DHAVE_SYS_STAT_H=1', '-DHAVE_STDLIB_H=1', '-DHAVE_STRING_H=1', '-DHAVE_MEMORY_H=1', '-DHAVE_STRINGS_H=1', '-DHAVE_INTTYPES_H=1', '-DHAVE_STDINT_H=1', '-DHAVE_UNISTD_H=1', '-DHAVE_TR1_UNORDERED_MAP=1', '-DHAVE_TR1_UNORDERED_SET=1', '-DHAVE_STD_LIMITS=1', '-DHAVE_NAMESPACES=1', '-DHAVE_SSTREAM=1', '../test.c', '-c', '-o', 'test.c.1.o']
[2/2] cprogram: build/default/.conf_check_442bca0929fcbd49036b01ec2feae7be/testbuild/test.c.1.o -> build/default/.conf_check_442bca0929fcbd49036b01ec2feae7be/testbuild/testprog

['/usr/bin/gcc', 'test.c.1.o', '-o', '/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open/build/default/.conf_check_442bca0929fcbd49036b01ec2feae7be/testbuild/testprog', '-lm']
yes
[1/2] c: src/contrib/brkpnts/brkpnts.c -> build/default/.conf_check_7eb2cb44a85c4fc8de72b3a473bc25ed/testbuild/brkpnts.c.1.o

['/usr/bin/gcc', '-DDARWIN=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '-DHAVE_STDIO_H=1', '-DHAVE_ASSERT_H=1', '-DHAVE_SYS_TIME_H=1', '-DHAVE_SYS_TYPES_H=1', '-DHAVE_SYS_STAT_H=1', '-DHAVE_STDLIB_H=1', '-DHAVE_STRING_H=1', '-DHAVE_MEMORY_H=1', '-DHAVE_STRINGS_H=1', '-DHAVE_INTTYPES_H=1', '-DHAVE_STDINT_H=1', '-DHAVE_UNISTD_H=1', '-DHAVE_TR1_UNORDERED_MAP=1', '-DHAVE_TR1_UNORDERED_SET=1', '-DHAVE_STD_LIMITS=1', '-DHAVE_NAMESPACES=1', '-DHAVE_SSTREAM=1', '../../../../src/contrib/brkpnts/brkpnts.c', '-c', '-o', 'brkpnts.c.1.o']
[2/2] cprogram: build/default/.conf_check_7eb2cb44a85c4fc8de72b3a473bc25ed/testbuild/brkpnts.c.1.o -> build/default/.conf_check_7eb2cb44a85c4fc8de72b3a473bc25ed/testbuild/test_brkpnts

['/usr/bin/gcc', 'brkpnts.c.1.o', '-o', '/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open/build/default/.conf_check_7eb2cb44a85c4fc8de72b3a473bc25ed/testbuild/test_brkpnts', '-lm']
/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open/build/default/.conf_check_7eb2cb44a85c4fc8de72b3a473bc25ed/testbuild/test_brkpnts
err: Bernoulli and Aux function limit evaluation, (c) 1992 K. Kramer
BP0_BERN: Asymptotic
BP1_BERN: Secant
BP2_BERN: Secant
BP3_BERN: Asymptotic
BP4_BERN: Asymptotic
BP0_DBERN: Asymptotic
BP2_DBERN: Secant
BP3_DBERN: Secant
BP5_DBERN: Asymptotic
BP0_AUX1: Secant
BP1_AUX1: Secant
BP0_DAUX1: Secant
BP1_DAUX1: Secant
BP2_DAUX1: Asymptotic
BP3_DAUX1: Asymptotic
BP4_DAUX1: Asymptotic
BP5_DAUX1: Asymptotic
BP0_AUX2: Asymptotic
BP1_AUX2: Asymptotic
BP2_AUX2: Asymptotic
BP0_DAUX2: Asymptotic
Test completed, writing to output file.

------------------------------------------
Checking for header petscversion.h
==>
#include <petscversion.h>

int main() {
    return 0;
}

<==
[1/2] cxx: build/default/.conf_check_d243d33c8aa2aa25102b42743f74f68c/test.cpp -> build/default/.conf_check_d243d33c8aa2aa25102b42743f74f68c/testbuild/test.cpp.1.o

['/usr/bin/g++', '-I/Users/zipp/Eigen-Compiles/GeniusTCAD/petsc-3.1-p8_2/with-mpi-gcc-4.2_instructed/include', '-I/Users/zipp/Eigen-Compiles/GeniusTCAD/petsc-3.1-p8_2/include', '-DDARWIN=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '-DHAVE_STDIO_H=1', '-DHAVE_ASSERT_H=1', '-DHAVE_SYS_TIME_H=1', '-DHAVE_SYS_TYPES_H=1', '-DHAVE_SYS_STAT_H=1', '-DHAVE_STDLIB_H=1', '-DHAVE_STRING_H=1', '-DHAVE_MEMORY_H=1', '-DHAVE_STRINGS_H=1', '-DHAVE_INTTYPES_H=1', '-DHAVE_STDINT_H=1', '-DHAVE_UNISTD_H=1', '-DHAVE_TR1_UNORDERED_MAP=1', '-DHAVE_TR1_UNORDERED_SET=1', '-DHAVE_STD_LIMITS=1', '-DHAVE_NAMESPACES=1', '-DHAVE_SSTREAM=1', '../test.cpp', '-c', '-o', 'test.cpp.1.o']
[2/2] cxxprogram: build/default/.conf_check_d243d33c8aa2aa25102b42743f74f68c/testbuild/test.cpp.1.o -> build/default/.conf_check_d243d33c8aa2aa25102b42743f74f68c/testbuild/testprog

['/usr/bin/g++', 'test.cpp.1.o', '-o', '/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open/build/default/.conf_check_d243d33c8aa2aa25102b42743f74f68c/testbuild/testprog']
yes
------------------------------------------
Checking for MPI
yes
------------------------------------------
Checking Fortran library
['/usr/bin/g++', '-v', 'test.cc']
err: Using built-in specs.
Target: i686-apple-darwin10
Configured with: /var/tmp/gcc/gcc-5666.3~6/src/configure --disable-checking --enable-werror --prefix=/usr --mandir=/share/man --enable-languages=c,objc,c++,obj-c++ --program-transform-name=/^[cg][^.-]*$/s/$/-4.2/ --with-slibdir=/usr/lib --build=i686-apple-darwin10 --program-prefix=i686-apple-darwin10- --host=x86_64-apple-darwin10 --target=i686-apple-darwin10 --with-gxx-include-dir=/include/c++/4.2.1
Thread model: posix
gcc version 4.2.1 (Apple Inc. build 5666) (dot 3)
 /usr/libexec/gcc/i686-apple-darwin10/4.2.1/cc1plus -quiet -v -imultilib x86_64 -D__DYNAMIC__ test.cc -fPIC -quiet -dumpbase test.cc -mmacosx-version-min=10.6 -m64 -mtune=core2 -auxbase test -version -D__private_extern__=extern -o /var/tmp//ccrp3UPu.s
ignoring nonexistent directory "/usr/lib/gcc/i686-apple-darwin10/4.2.1/../../../../i686-apple-darwin10/include"
#include "..." search starts here:
#include <...> search starts here:
 /usr/include/c++/4.2.1
 /usr/include/c++/4.2.1/i686-apple-darwin10/x86_64
 /usr/include/c++/4.2.1/backward
 /usr/local/include
 /usr/lib/gcc/i686-apple-darwin10/4.2.1/include
 /usr/include
 /System/Library/Frameworks (framework directory)
 /Library/Frameworks (framework directory)
End of search list.
GNU C++ version 4.2.1 (Apple Inc. build 5666) (dot 3) (i686-apple-darwin10)
    compiled by GNU C version 4.2.1 (Apple Inc. build 5666) (dot 3).
GGC heuristics: --param ggc-min-expand=150 --param ggc-min-heapsize=131072
Compiler executable checksum: 22fb756395dfa6be69ae16983397534c
 /usr/libexec/gcc/i686-apple-darwin10/4.2.1/as -arch x86_64 -force_cpusubtype_ALL -o /var/tmp//ccElszPq.o /var/tmp//ccrp3UPu.s
 /usr/libexec/gcc/i686-apple-darwin10/4.2.1/collect2 -dynamic -arch x86_64 -macosx_version_min 10.6 -weak_reference_mismatches non-weak -o a.out -lcrt1.10.6.o -L/usr/lib/gcc/i686-apple-darwin10/4.2.1/x86_64 -L/usr/lib/gcc/i686-apple-darwin10/4.2.1/x86_64 -L/usr/lib/i686-apple-darwin10/4.2.1 -L/usr/lib/gcc/i686-apple-darwin10/4.2.1 -L/usr/lib/gcc/i686-apple-darwin10/4.2.1 -L/usr/lib/gcc/i686-apple-darwin10/4.2.1/../../../i686-apple-darwin10/4.2.1 -L/usr/lib/gcc/i686-apple-darwin10/4.2.1/../../.. /var/tmp//ccElszPq.o -lstdc++ -lSystem -lgcc -lSystem

['/usr/bin/gfortran', '-v', 'test.f90']
err: Driving: /usr/bin/i686-apple-darwin10-gfortran-4.2.1 -mmacosx-version-min=10.6 -v test.f90 -m64 -lgfortranbegin -lgfortran -shared-libgcc
Using built-in specs.
Target: i686-apple-darwin10
Configured with: /Builds/apple/gcc-5664/build/obj/src/configure --disable-checking --prefix=/usr --mandir=/share/man --enable-languages=c,objc,c++,obj-c++,fortran --program-transform-name=/^[cg][^.-]*$/s/$/-4.2/ --with-slibdir=/usr/lib --build=i686-apple-darwin10 --program-prefix=i686-apple-darwin10- --host=x86_64-apple-darwin10 --target=i686-apple-darwin10 --with-gxx-include-dir=/include/c++/4.2.1
Thread model: posix
gcc version 4.2.1 (Apple Inc. build 5664)
 /usr/libexec/gcc/i686-apple-darwin10/4.2.1/f951 test.f90 -fPIC -quiet -dumpbase test.f90 -mmacosx-version-min=10.6 -m64 -mtune=core2 -auxbase test -version -I /usr/lib/gcc/i686-apple-darwin10/4.2.1/finclude -o /var/tmp//ccfw8T9t.s
GNU F95 version 4.2.1 (Apple Inc. build 5664) (i686-apple-darwin10)
    compiled by GNU C version 4.2.1 (Apple Inc. build 5664).
GGC heuristics: --param ggc-min-expand=150 --param ggc-min-heapsize=131072
 /usr/libexec/gcc/i686-apple-darwin10/4.2.1/as -arch x86_64 -force_cpusubtype_ALL -o /var/tmp//ccqqIpIJ.o /var/tmp//ccfw8T9t.s
 /usr/libexec/gcc/i686-apple-darwin10/4.2.1/collect2 -dynamic -arch x86_64 -macosx_version_min 10.6 -weak_reference_mismatches non-weak -o a.out -lcrt1.10.6.o -L/usr/lib/gcc/i686-apple-darwin10/4.2.1/x86_64 -L/usr/lib/gcc/i686-apple-darwin10/4.2.1/x86_64 -L/usr/lib/i686-apple-darwin10/4.2.1 -L/usr/lib/gcc/i686-apple-darwin10/4.2.1 -L/usr/lib/gcc/i686-apple-darwin10/4.2.1 -L/usr/lib/gcc/i686-apple-darwin10/4.2.1/../../../i686-apple-darwin10/4.2.1 -L/usr/lib/gcc/i686-apple-darwin10/4.2.1/../../.. /var/tmp//ccqqIpIJ.o -lgfortranbegin -lgfortran -lSystem -lgcc -lSystem

ok
------------------------------------------
Checking for library Petsc
==>

int main() {
    return 0;
}

<==
[1/2] cxx: build/default/.conf_check_33d7662c7bfa10a03c181cfbdb062a8b/test.cpp -> build/default/.conf_check_33d7662c7bfa10a03c181cfbdb062a8b/testbuild/test.cpp.1.o

['/usr/bin/g++', '-DDARWIN=1', '-DSIZEOF_DOUBLE=8', '-DSIZEOF_FLOAT=4', '-DSIZEOF_INT=4', '-DSIZEOF_LONG_INT=8', '-DSIZEOF_LONG_LONG_INT=8', '-DSIZEOF_SHORT_INT=2', '-DSIZEOF_VOID_P=8', '-DHAVE_FCNTL_H=1', '-DHAVE_FLOAT_H=1', '-DHAVE_FENV_H=1', '-DHAVE_LIMITS_H=1', '-DHAVE_STDDEF_H=1', '-DHAVE_STDIO_H=1', '-DHAVE_ASSERT_H=1', '-DHAVE_SYS_TIME_H=1', '-DHAVE_SYS_TYPES_H=1', '-DHAVE_SYS_STAT_H=1', '-DHAVE_STDLIB_H=1', '-DHAVE_STRING_H=1', '-DHAVE_MEMORY_H=1', '-DHAVE_STRINGS_H=1', '-DHAVE_INTTYPES_H=1', '-DHAVE_STDINT_H=1', '-DHAVE_UNISTD_H=1', '-DHAVE_TR1_UNORDERED_MAP=1', '-DHAVE_TR1_UNORDERED_SET=1', '-DHAVE_STD_LIMITS=1', '-DHAVE_NAMESPACES=1', '-DHAVE_SSTREAM=1', '-DHAVE_PETSC=1', '-DHAVE_MPI=1', '../test.cpp', '-c', '-o', 'test.cpp.1.o']
[2/2] cxxprogram: build/default/.conf_check_33d7662c7bfa10a03c181cfbdb062a8b/testbuild/test.cpp.1.o -> build/default/.conf_check_33d7662c7bfa10a03c181cfbdb062a8b/testbuild/testprog

['/usr/bin/g++', '-lpetsc', '-L/Users/zipp/Eigen-Compiles/GeniusTCAD/petsc-3.1-p8_2/with-mpi-gcc-4.2_instructed/lib', '-lcmumps', '-ldmumps', '-lsmumps', '-lzmumps', '-lmumps_common', '-lpord', '-lscalapack', '-lblacs', '-lsuperlu_dist_2.4', '-lparmetis', '-lmetis', '-lsuperlu_4.0', '-lflapack', '-lfblas', '-lgfortranbegin', '-lgfortran', '-Wl,-Bdynamic', 'test.cpp.1.o', '-o', '/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open/build/default/.conf_check_33d7662c7bfa10a03c181cfbdb062a8b/testbuild/testprog']
err: ld: unknown option: -Bdynamic
collect2: ld returned 1 exit status

from /Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open: Test does not build: Traceback (most recent call last):
  File "/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open/.waf-1.6.11-0527ecccd74b489313f166a2f2ac76ed/waflib/Tools/c_config.py", line 445, in run_c_code
    bld.compile()
  File "/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open/.waf-1.6.11-0527ecccd74b489313f166a2f2ac76ed/waflib/Build.py", line 190, in compile
    raise Errors.BuildError(self.producer.error)
BuildError: Build failed
 -> task in 'testprog' failed (exit status 1): 
    {task 4314784016: cxxprogram test.cpp.1.o -> testprog}
['/usr/bin/g++', '-lpetsc', '-L/Users/zipp/Eigen-Compiles/GeniusTCAD/petsc-3.1-p8_2/with-mpi-gcc-4.2_instructed/lib', '-lcmumps', '-ldmumps', '-lsmumps', '-lzmumps', '-lmumps_common', '-lpord', '-lscalapack', '-lblacs', '-lsuperlu_dist_2.4', '-lparmetis', '-lmetis', '-lsuperlu_4.0', '-lflapack', '-lfblas', '-lgfortranbegin', '-lgfortran', '-Wl,-Bdynamic', 'test.cpp.1.o', '-o', '/Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open/build/default/.conf_check_33d7662c7bfa10a03c181cfbdb062a8b/testbuild/testprog']

no
from /Users/zipp/Eigen-Compiles/GeniusTCAD/Genius-TCAD-Open: The configuration failed