Setting up compute environment

cogent3 / Cogent3Workshop

Materials for the Phylomania workshop

BSD 3-Clause "New" or "Revised" License

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Setting up compute environment #2

Closed GavinHuttley closed 11 months ago

GavinHuttley commented 11 months ago

Docker / Colima installations
Instructions per OS
VS Code, or another approach to running Jupyter
VS Code extensions

Put other points below

GavinHuttley commented 11 months ago

Peter Minogue's suggestion was to use conda. This can work, but on Windows I am not sure about the terminal experience.

GavinHuttley commented 11 months ago

@khiron I have started a wiki page for comp setup. Our essential requirements are that a users VS Code terminal connects to the VM so they can run commands. Similarly, that when they initiate Jupyter notebooks it is connecting to the VM. I probably need to demo what's required so you can establish config.

khiron commented 11 months ago

I have a working document in /docker/README.md pending translation to the wiki

It includes how to do everything from VS Code (build/run/attach to container)

Also to build and run from the host OS and work with notebooks in the host OS's browser

khiron commented 11 months ago

README.md has been translated to the wiki.