EnsemblLite segment

[GavinHuttley]

Using EnsemblLite

• [ ] what's in the Docker container, how to use it, how to update the code contained
• [ ] overview of usage:
  • [ ] define what you want, export a sample config
  • [ ] download it, properties of the download
  • [ ] install it, properties of the download
  • [ ] run a command (preferably one also done in the REST demo)
• [ ] using terminal commands, the tui and standard terminal
• [ ] what can it do
• [ ] what it can't
• [ ] how to raise issues
• [ ] start a discussion

using cogent3 on the output

• [ ] aligning CDS sequences
• [ ] selecting alignments , visualising, etc..

Contributing to EnsemblLite

• [ ] @gavin to define some easy first issues
• [ ] hackathon, sprint
• [ ] demo of the GitHub software development workflow (if required)
• [ ] code of conduct
• [ ] vote for features
• [ ] setup GitHub accounts
• [ ] fork, clone
• [ ] tackle an issue!