Closed dhimmel closed 7 years ago
@stephenshank I figured out the issue :crossed_fingers::
Version 5 on figshare was based on b054721bbde1ed0abc19f395eb7629728870cb7c, which predates the cognoma/genes
integration.
Version 6 on figshare, which I just uploaded, is based on the current repository (1d961fb2201209b3ec4774aaadd36f36cf6d165e).
So hopefully if you update to version 6 the issues will be fixed. Sorry about that -- my bad with not updating the figshare.
@vasudevanv, this is the sort of mistake that continuous deposition would solve -- basically any time the cancer-data code is updated the datasets are regenerated and uploaded to figshare. Not that this is worth the time to implement, but it's the way of the future.
See https://github.com/cognoma/core-service/pull/42#discussion_r91731695, where @stephenshank has discovered a gene with an invalid
entrez_gene_id
inmutation-matrix.tsv.bz2
from https://doi.org/10.6084/m9.figshare.3487685.v5.The gene is
117153
, which is not included ingenes.tsv
.