need a workaround for PSICQUIC in biogrid queries

cokelaer / bioservices

Access to Biological Web Services from Python.

http://bioservices.readthedocs.io

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need a workaround for PSICQUIC in biogrid queries #184

Closed mkarikom closed 3 years ago

mkarikom commented 3 years ago

just the example from the docs:

b = bg(query=["map2k4","akt1"],taxId = '10090')
WARNING [bioservices:PSICQUIC]:  The URL (http://www.ebi.ac.uk/Tools/webservices/psicquic) provided cannot be reached.

What is the reason for this requirement that PSICQUIC be reachable?

EBI web services don't have a great track record for reliability (sometimes they just go dark permanently). Better to use NCBI or SIB.

cokelaer commented 3 years ago

This is just a warning, which is annoying indeed but has no impact. This should be removed in new version 1.7.11 soon online.

mkarikom commented 3 years ago

ok thanks!

On Sun, Dec 20, 2020 at 1:35 PM Thomas Cokelaer notifications@github.com wrote:

This is just a warning, which is annoying indeed but has no impact. This should be removed in new version 1.7.11 soon online.

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