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cokelaer / bioservices

Access to Biological Web Services from Python.
http://bioservices.readthedocs.io
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uniprot ome columns have been dropped or changed #226

Closed cokelaer closed 1 year ago

cokelaer commented 2 years ago

Looks like these arguments have been dropped:

WARNING [bioservices.UniProt:837]:  column could not be parsed. protein_families
WARNING [bioservices.UniProt:837]:  column could not be parsed. Gene names
WARNING [bioservices.UniProt:837]:  column could not be parsed. go
WARNING [bioservices.UniProt:837]:  column could not be parsed. go_ids
WARNING [bioservices.UniProt:837]:  column could not be parsed. interaction
WARNING [bioservices.UniProt:837]:  column could not be parsed. keyword
GianArauz commented 2 years ago

I add another argument to this list: WARNING [bioservices.UniProt:838]: column could not be parsed. lit_pubmed_id

cokelaer commented 1 year ago

@GianArauz thanks again for the PR. Concerning the warnings, they will be removed in the next release of bioservices.